Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00372 ATGGGAGCTATTGCTGGAGAAGAGCTGCTGAAATGGGAGAAGATGCAAGGAGTGAGTGGACGCGAAGAGAAGATCCTTGTGTCAATAAGGTTGAGGCCTCTGAATGAGAAGGAAATTGCTGCTAATGAATCGGCAGATTGGGAATGCATTAATGATACTACCATTCTGTACCGGAACACACTGCGTGAGGGTTCCACATTTCCAAGTGCCTACACATTTGACAGAGTATTTCGGGGTGATTGTGTCACACGGCAGGTATATGAGGAAGGAGCCAAAGAAGTTGCTCTTTCAGTTGTCAGTGGAATTAACTCAAGTATCTTTGCATATGGGCAAACAAGTAGTGGAAAGACATACACGATGGTTGGAATAACCGAATATGCAGTTGCAGATATTTTTGACTACATAAAGATGCATGAAGAAAGAGCATTTATATTGAAGTTCTCAGCAATTGAAATCTACAATGAAATTGTTAGAGACCTCCTCAGCACTGACAACACTCCACTTAGGCTCCGTGATGATCCTGAGAAAGGGCCCATTTTAGAGAAACTCACTGAGGAGACTCTACGGGACTGGGGGCATTTAAAAGAGCTTATAGCCTTCAGTGAAGCTCAGAGACAGGTGGGAGAGACATATCTAAATGAAAAGAGTTCAAGATCTCACCAAATTATCAGATTGACAATGGAAAGTTCTGCCAGGGAATTCCTGGGCAAAGGCAACTCAGCCACCCTAGTTGCTAGTGTGAATTTTGTTGATTTGGCAGGGAGCGAGCGCGCATCTCAGGCATCATCAGCTGGGATGAGATTAAAAGAAGGTTGTCATATAAACCGGAGTTTACTTACTCTTGGAACAGTTATTCGTAAGCTTAGTAAGGGAAGACATGGACACATCAATTACAGAGATTCCAAGTTGACACGCATACTGCAGCCTTGCTTGGGTGGAAATGCTAGAACAGCTATCATTTGCACTTTGAGCCCTGCACGAAGCCATGTTGAGCAAACCAGAAATACACTTCTTTTTGCTTGTTGTGCAAAAGAAGTCACCACTAAAGCACAAGTGAATGTCGTGATGTCTGATAAGGCTTTGGTCAAGCATTTGCAAAAAGAGGTGGCTAGATTGGAGAGTGAGTTAAGAACTCCTGGTCCTGCTACCTCCAGTTGTGATTATGCATCATTGTTGAGAAAGAAAGATCTCCAGATAGAAAAGATGGAGAAGGAGATTAGGGAGATAACAAAGCAACGTGACCTTGCTGAATCAAGGGTTGAGGATTTGCTGCGCTTGGTTGGAAAGGAGCAGATGTCTGGAAAAGAAGGGGAAGATATCTGGGAAGATGACTGTTCAGTATCGGAGTCCTCGAGCATTTGTGGTCCACATCGTCCAGAAACACACATTAGAGAGTTCAACAATCCTCATTATAATGAAGATAGTGGAAGTAATCTTGATGAAGAACCTGATGATTACTGCAAAGAAGTTCGATGTGTTGACAATGGGGACTTAGCTTTGTCGATGTCTGGAGAGGAAAGTGGAATAAGCCAGGAAATATCTACACATTTGAATGAAGATACTGGAGATAGTCAGATCCAAGAAAATTCAACATTGCTGGAGCAGAGACTGCATGATGTACAGTCAACTATTGATTCTCTAGTATGTCCTTCCCCTGATGAACAATCTCCAGAGGTCACGTCAGAAAATATGTCGAATTATAAGAATCTTAAATTAACTAGAAGCTGGAGTTGTACGGAATATCGCATGACTGGTTCTCCTGAGAGAGTAGGAGAAATACAGAGGACTCCAGCTAATGGATATGAACAAGGATTCCCTGGAAGGCCAGATAGTTTCCGGAGAAAGTTTCTTCCATTAAATTATGATGGTTCCACAAGATTGTCAAGGAATGGTTCTCAGTCTTCCATTGGAAGTCCTTCTGTGGATAGAGCCAGCAGCATAAGAACATCTGCTGATGAGGATATTACTAGCATCCAGACTTTTGTTGCTGGGATGAAAGAAATGGTCAAACAAGAATATGAGAAGCAGCTTGTGGATGGTCAGGATCAGGAGACAGGAAGAAAGAGGAACGTGAAAGATGTAGGTGTGGATCCGATGTTGGAGGCACCTGGAACTCCTTTAGATTGGTCTCTGCAGTTCAAGAGACAGCAAAAAGAGATAATTGAACTGTGGAAATCTTGCTCTGTACCATTGACCCACAGGACCTACTTCTTTCTTTTGTTCAGGGGTGACCCAACAGACTCCATTTACATGGAGGTAGAACTCAGAAGACTATCCTTTCTCAAAGAATCATTTTCTGATGGAAACCAATCTGTGAAAGATGGTCAAACAATCACACTAGCTTCAAGTGTGAAAGCTCTTCGCCGAGAAAGAGGAATGCTTGTGAAGCTTATGCAGAGGAGGCTTTCGGAGAAGGAGAGAAAAAGGCTGTACGAGGAGTGGGACATTCCATTGGATTCAAAGCGCAGGAGGATGCAACTAGCGAGCCGTTTATGGAGCGACACTGATATGAACCACGTAATGCAAAGTGCCACAATAGTTGCAAAGTTAGTCAGGTTTTGGGAGCGGGGCAAGGCCCTGAAGGAGATGTTTGGGCTTAGCTTCACACCCCAACTCACTGGGCGGAGATCTTACTCGTGGATAAATAGCTGA 2652 0.4348 MGAIAGEELLKWEKMQGVSGREEKILVSIRLRPLNEKEIAANESADWECINDTTILYRNTLREGSTFPSAYTFDRVFRGDCVTRQVYEEGAKEVALSVVSGINSSIFAYGQTSSGKTYTMVGITEYAVADIFDYIKMHEERAFILKFSAIEIYNEIVRDLLSTDNTPLRLRDDPEKGPILEKLTEETLRDWGHLKELIAFSEAQRQVGETYLNEKSSRSHQIIRLTMESSAREFLGKGNSATLVASVNFVDLAGSERASQASSAGMRLKEGCHINRSLLTLGTVIRKLSKGRHGHINYRDSKLTRILQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKEVARLESELRTPGPATSSCDYASLLRKKDLQIEKMEKEIREITKQRDLAESRVEDLLRLVGKEQMSGKEGEDIWEDDCSVSESSSICGPHRPETHIREFNNPHYNEDSGSNLDEEPDDYCKEVRCVDNGDLALSMSGEESGISQEISTHLNEDTGDSQIQENSTLLEQRLHDVQSTIDSLVCPSPDEQSPEVTSENMSNYKNLKLTRSWSCTEYRMTGSPERVGEIQRTPANGYEQGFPGRPDSFRRKFLPLNYDGSTRLSRNGSQSSIGSPSVDRASSIRTSADEDITSIQTFVAGMKEMVKQEYEKQLVDGQDQETGRKRNVKDVGVDPMLEAPGTPLDWSLQFKRQQKEIIELWKSCSVPLTHRTYFFLLFRGDPTDSIYMEVELRRLSFLKESFSDGNQSVKDGQTITLASSVKALRRERGMLVKLMQRRLSEKERKRLYEEWDIPLDSKRRRMQLASRLWSDTDMNHVMQSATIVAKLVRFWERGKALKEMFGLSFTPQLTGRRSYSWINS 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00372 883 Coils Coil 355 375 - -
Cca04g00372 883 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00372 883 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00372 883 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00372 883 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00372 883 SMART kinesin_4 22 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00372 883 CDD KISc_CENP_E 24 346 - -
Cca04g00372 883 Coils Coil 392 426 - -
Cca04g00372 883 MobiDBLite consensus disorder prediction 623 648 - -
Cca04g00372 883 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00372 883 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g00372 883 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca04g00372 883 Pfam Domain of unknown function (DUF3490) 712 871 IPR021881 -
Cca04g00372 883 PANTHER CENTROMERE PROTEIN E 6 883 - -
Cca04g00372 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 378 IPR027417 -
Cca04g00372 883 PANTHER KINESIN-LIKE PROTEIN KIN-7F 6 883 - -
Cca04g00372 883 Gene3D Kinesin motor domain 17 377 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00372 Cca-Chr4 3746280 3754184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00372 22 427 Miscellaneous Gene Families AT5G06670 39.614 5.35e-83 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00372 K11498 - gmx:100820012 1588.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00372 04 3746280 3754184 Cca04g00372 04 3746280 3754184 ECH
Cca04g00372 04 3746280 3754184 Cca06g01284 06 27516085 27524309 ECH