Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03116 ATGGAAAGAAGAGAAAAAGGGTTAATGGTGGAAAAGTTGAAAGGGAAAAGAGGAGGCCCTTCTACTCCCCCACCAACATGGAGACTTGAGTTTCCATCTCAGCTGAATGAGAATAACAGAAAGCAGGTTCAAGAGTTTCTCAACTTTCCCACTTCAACAACACTCTCTGCCAGAAGCCTCTGTGCCAAACTCTGGCAAATTCAACAATTGGCTGAGCCTTCTCCTACTCACCGGCCAGCATCTGCTACGGGCTTGAGAAGGCATGTTCAAACATCACTTGTTCAGCACCATAGATCAGTTAAAAGAAATGGCCGCACTAAACAGCCTGTATCCCCTCCAACGCAAGTGGCCCCGTATAATAATCATGTAAAACCTAAAAGTTCCTTAGACTTGAAGGGTTGGATTACAGAGTCAAGTCGCAAACCTAAGACATCCAGAGAGTTACTCAACCGTATCTGGTGTCTGGAAGAACAGCATGCATCAAATATATCAGAAGTGAAAGCCCTGAAAATGGAACTAGATCTTTCTCGGGCGCGGGTTAAAGAGTTACAACACCAAAAGCAATTGAATAAGCATGAAATGGAGAACTTAATGAAGCAAATAACTGAGGAGAAGCTTGTTAGGAAGAACAAAGAGCATGACGAAATTAAAGCTGCAATACAATCTGTCATGCAAGAGATAGAAGATGAAAGGAGGTTGAGAAAGCATTCAGAAAGCCAGCACCGGAGATTGGCTAGGGAGCTTTCTGAAGTGAAGTCTTCATTCAATGGTTCTCTGAGAGATCTTGAAAAAGAGAGAAAAGCGCGGATCCTTCTAGAGAATTTGTGTGATGATTTTGCCAAAGGAATAAGAGATTATGAACACGAGGTACGTTCTCTTGTGCATAATAATAACGCTGAGAAGGGTCAAGGTAAAGAGGATAATAGCCTTGATAGGCTAATTCTTCATCTTTCAGAAGCTTGGCTTGATGAGCGCAAGCAAATGAAGTTAGTTCAAGCTGGCAATGGTCTCCCACAGATAGATTCATCAATTGTTGACAAGTTAGGTGTTGATATTGAAACATTTCTTCATGCAAAAAGATCTGTTAATTTGATAAGGTATGGCAACACCACCACAAAGGAACCCAAGGAAATTTACCCTTGCCTACATTCTCCACTAAAGGAGGCCACAAGTGCACCTCCTAATATGGCTGTGGAAGACTCCACTGGTACCAACATTTTTGAGCAGAGAAGGCCTTCAGACAAATTTGGCTTCAAAGTGAACAGAAACAATACTGCAGAGGTCCATAAAGAGAAGAAAGGAAGGCAGAATTCAGTGAGGAAACAAGTCGAGTCCAAGGAGGAGTGTTTTGAGTTGCAAGCAAATATGATATGTGATGAAAATGAGAGTTGGTTTGTTGAGAGGAAATCAAGTGAAGTTGGAGGGGACAGTACAGTTCTATATAATACCCCTGGGGCATCAACTGTGTGTGAAGGTCCAACAGAAAGTAATACACTATGGACAAAGAGGATGAATTCAAGTCTCAACATTGTTAGAAACAGTTCCTTGTCTTCTGAAGGAAATGACAAGGTTTATCCTGAGAGTATTTTCAGGGAAGATTCATGTGTCCATGCTGCAGTTACAGGTAATGGCAGTCCAGTAAAAAAGTGGAAACCAACATTGATTGTCCCAGATTTTGGCAAGTCTGACCCTTTAAAGGACAACACATTGATGGCCAAACTGCTTGAAGCAAGGTTGGAGAAGCACAAATCTCGCTCCAGAGCTACCATTAGACAAGTTTCTGATGAGAAACATCGGAATGTGAGTAGATGA 1812 0.4194 MERREKGLMVEKLKGKRGGPSTPPPTWRLEFPSQLNENNRKQVQEFLNFPTSTTLSARSLCAKLWQIQQLAEPSPTHRPASATGLRRHVQTSLVQHHRSVKRNGRTKQPVSPPTQVAPYNNHVKPKSSLDLKGWITESSRKPKTSRELLNRIWCLEEQHASNISEVKALKMELDLSRARVKELQHQKQLNKHEMENLMKQITEEKLVRKNKEHDEIKAAIQSVMQEIEDERRLRKHSESQHRRLARELSEVKSSFNGSLRDLEKERKARILLENLCDDFAKGIRDYEHEVRSLVHNNNAEKGQGKEDNSLDRLILHLSEAWLDERKQMKLVQAGNGLPQIDSSIVDKLGVDIETFLHAKRSVNLIRYGNTTTKEPKEIYPCLHSPLKEATSAPPNMAVEDSTGTNIFEQRRPSDKFGFKVNRNNTAEVHKEKKGRQNSVRKQVESKEECFELQANMICDENESWFVERKSSEVGGDSTVLYNTPGASTVCEGPTESNTLWTKRMNSSLNIVRNSSLSSEGNDKVYPESIFREDSCVHAAVTGNGSPVKKWKPTLIVPDFGKSDPLKDNTLMAKLLEARLEKHKSRSRATIRQVSDEKHRNVSR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03116 603 MobiDBLite consensus disorder prediction 96 123 - -
Cca03g03116 603 Coils Coil 166 200 - -
Cca03g03116 603 MobiDBLite consensus disorder prediction 581 603 - -
Cca03g03116 603 PANTHER INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1-RELATED 76 590 - -
Cca03g03116 603 PANTHER INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1-RELATED 4 71 - -
Cca03g03116 603 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g03116 603 MobiDBLite consensus disorder prediction 105 122 - -
Cca03g03116 603 PANTHER GB|AAF24581.1 76 590 IPR043424 -
Cca03g03116 603 PANTHER GB|AAF24581.1 4 71 IPR043424 -
Cca03g03116 603 Coils Coil 206 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03116 Cca-Chr3 52628145 52632991 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03116 - - ccaj:109797875 1209.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03116 03 52628145 52632991 Cca03g03116 03 52628145 52632991 ECH
Cca03g03116 03 52628145 52632991 Cca01g02359 01 52190081 52194704 PCT