Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02979 ATGGATAACAAAACCACTGAACCAACCGATTCTTCTACTCCTCTTCTCCCCACAAGTTACGCTGCCAATGATGCCGTTGACTTTCTCCATAACGGACCTTCTTCCCCACCAACTACTCTTATACTCACCACCCTCGTCGCTGTCTTTGGTTCTTACGTTTTTGGCTCTGCTATTGGATATTCATCACCTACTCAATCTGGAATCATGCGTGACCTCGATCTAGGAGTGGCCCAGTACTCAATTTTTGGTTCCATTTTGACGATTGGAGCCATGATTGGTGCCGTTGCGAGTGGTAGAATAGCAGATTACGCAGGTCGTCGAGTTGCTATGGGATTCTCCCAGGTTTTCTGCATCTTGGGATGGTTTGCCATAACATTCTCAAAGGTAGCTATGTGGctttatgttggaaggttgttgataggatgtgggattggccttctatcttatgtggtacccatttatgtagctgaaataacacccaagaatcttcgaggggcattcactgcagttcatcagTTAATGATTTGTATTGGGATGTCATTAACTTATCTTATTGGAGCATATGTAAATTGGCGGATCTTGGCTCTAATTGGAACTATTCCGTGTCTTGTGCAGCTTCTGAGTCTTCCCTTCATTCCAGATTCTCCTAGGTGGCTGGCTAAGGTCGGTCGCTTGAAAGAGAGCGATTCTGTTTTACAGCGTCTCAGGGGGAAGGATGCTGATGTTTATCAAGAGGCCACTGAAATCAGAGATTATACAGCAGCCTTTCAGCGGCAAACAGAAGCTAGCATCATTGGCTTATTTCAAATGCAGTATTTGAAGTCACTTATTGTTGGAGTCGGCTTGATGATATTGCAACAATTTGGAGGGATTAATGGCATTGTTTTTTATGCCAACTCTATATTTATCTCAGCTGGGTTTTCAGAAAGTATTGGAACAATAGCAATGGTTGCCGTTAAGATTCCAATGACAACTTTAGGAGTGCTTTTAATGGATAAATCCGGAAGACGGCCACTTTTGCTGGTGTCTGCAGTGGGAACATGCTTAGGATGCTTCCTGGCAGCCTTGTCATTCGTTTTGCAGGACCTACATAAATGGAAGGGAGTTAGTCCCATTATGGCGCTAGTGGGTGTACTGGTATACGTGGGATCTTACTCGATAGGCATTGGAGCAATTCCATGGGTTATAATGTCTGAGATATTTCCCATTAACGTGAAGGGCTCTGCTGGAAGTCTTGTGACTTTGGTTAGCTGGTTGTGTTCTTGGATTGTGTCATATGCTTTTAACTTCCTCATGAGTTGGAGTTCAGCAGGAACTTTCTTCATGTTCTCTAGCATATGTGGCTTCACTGTGCTATTCGTAGCAAAACTAGTACCAGAAACCAAGGGGCGTACACTAGAAGAAATTCAAGCTTCTTTGAATTCATATTCTTCAAAGAGATGA 1443 0.3985 MDNKTTEPTDSSTPLLPTSYAANDAVDFLHNGPSSPPTTLILTTLVAVFGSYVFGSAIGYSSPTQSGIMRDLDLGVAQYSIFGSILTIGAMIGAVASGRIADYAGRRVAMGFSQVFCILGWFAITFSKVAMWLYVGRLLIGCGIGLLSYVVPIYVAEITPKNLRGAFTAVHQLMICIGMSLTYLIGAYVNWRILALIGTIPCLVQLLSLPFIPDSPRWLAKVGRLKESDSVLQRLRGKDADVYQEATEIRDYTAAFQRQTEASIIGLFQMQYLKSLIVGVGLMILQQFGGINGIVFYANSIFISAGFSESIGTIAMVAVKIPMTTLGVLLMDKSGRRPLLLVSAVGTCLGCFLAALSFVLQDLHKWKGVSPIMALVGVLVYVGSYSIGIGAIPWVIMSEIFPINVKGSAGSLVTLVSWLCSWIVSYAFNFLMSWSSAGTFFMFSSICGFTVLFVAKLVPETKGRTLEEIQASLNSYSSKR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02979 480 PANTHER GENERAL SUBSTRATE TRANSPORTER 26 476 - -
Cca03g02979 480 TIGRFAM SP: MFS transporter, sugar porter (SP) family 41 469 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca03g02979 480 SUPERFAMILY MFS general substrate transporter 38 470 IPR036259 -
Cca03g02979 480 ProSitePatterns Sugar transport proteins signature 1. 97 113 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca03g02979 480 ProSiteProfiles Major facilitator superfamily (MFS) profile. 43 462 IPR020846 GO:0022857
Cca03g02979 480 Pfam Sugar (and other) transporter 44 471 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca03g02979 480 CDD MFS_GLUT6_8_Class3_like 41 468 IPR044775 GO:0008643|GO:0051119
Cca03g02979 480 Gene3D MFS general substrate transporter like domains 35 475 IPR036259 -
Cca03g02979 480 PANTHER - 26 476 - -
Cca03g02979 480 PRINTS Sugar transporter signature 51 61 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca03g02979 480 PRINTS Sugar transporter signature 134 153 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca03g02979 480 PRINTS Sugar transporter signature 286 296 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca03g02979 480 PRINTS Sugar transporter signature 375 396 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca03g02979 480 PRINTS Sugar transporter signature 398 410 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02979 Cca-Chr3 51230784 51235464 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02979 46 404 Organic Solute Cotransporters AT1G54730 66.574 6.63e-174 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02979 K03444 - gmx:100817150 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02073 03 41012208 41013541 Cca03g02979 03 51230784 51235464 ECH
Cca03g02979 03 51230784 51235464 Cca03g02979 03 51230784 51235464 ECH