Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02878 ATGAGTTCAGTTGTACCTCAAGTTTCCAAGAACAAGGCAATGTGGCTGCATCCAAAGGTTTTGGGTTTTAATCCTTCTGAAAGATGGGGGCACTCTGCTTGCTTCTCCAATAGCCTTATGTATGTCTTTGGGGGGTGTTGTGGGGGACTGCATTTTTGCGATGTTCTCACTTTGGACCTTAACAAAATGGTTTGGAGCAAGCTTACTACCACGGGTGAAAAGCCAGGGCCTAGAGATAGCCATAGTGCTGTTCTTGTGGGGCATAAAATGATAGTGTTTGGTGGTACAAATGGCTTTAAGAAGGTGAATCATGTTCATATACTTGATCTTGTTACCAAAGAGTGGGTTAGACCTGAGGTTAAAGGGACTCCTCCATCCCCACGTGAAAGCCATACTGCCACGCTCGTTGGTGATGAGAGGATAGTGATATTTGGTGGTAGTGGAGAAGGTCATGCTAACTATTTAAATGATTTACATATTCTTGATCTTCGAACCATGAGTTGGACCTCCCCTGAGTTGAAAGGTGATTTGCCTGTCCCTAGGGACAGTCACAGTACTCTTGCAATTGGAGACAAGCTTATTGTGTATGGTGGAGACTCTGGTGATCAGTATCATGGCAATGTTCACATGCTTGATATGGCAACAATGACTTGGTCTAGATTGACAATTCAAGGTTCTCCACCGGGGGTCAGGGCTGGTCATGCTGCAGTGAACATTGGAACAAAGGTTTATATCATTGGAGGAGTTGGAGATAAACGTTACTATAATGACGTTTGGATCTTTGATATCTGCAATTTTTCGTGGACTCAACTTGATATACCTTTTCAACAGCCACAAGGGCGATTTTCTCATACAGCTGTTGTTGCAGGCATTGATATTGTAATATATGGAGGTTGTGGGGAAGATGAACGGCCTCTCAAAGAATTGTTAGTGTTGCAGCTTGGAGCAGAGCATCCAAATGGGCGTTACTATATTCACATGTGCAAACCTTTTGGAACTTATATAACTCGAGAAAATAAAATTATCCCAGGAGAAGCAGATACCAACTCGAAACTTGTGAGGAATAATGTGGAAGCTTTCGGAAAAGGAGCTTATGAAGTTGCATCCGAAAAAGCACTCCCTTGTCTCTTTGACTCAGGTGCTTCACGACAGAAGAGGAGGAGAATTGCTGCTTCAAAGGTGTGGGATGTTGAATCAGAACAAGAAGAAAAGTTTCTTTCATTGTCCCTTCATTCATCTCCATACCAATCCGATCAAGAACAGACCCCAACTCAAAAAACAAATACGTTATTTCCAACCACTTGCCAACACGACAATGACTCAGATGATAAGAGAACCCCCCTTAAAACTCCACGTGATTTTCATTTCCGAGAACATAAACTAAAGCAACAACAATCTCTTTATGTTCACGAGGATAGAAAGAGAGCTCAACATCAGGCTGCAGAGCAGAAAGCCATGGGGCGAGGACCCATTCAACACATGATTGGTGCCGAAGTTCGTGGGAGAGTTAATGGAGCTTTTGACTCAGGAGCACTCTCTCCTGTGAATGGAAAGGTTTTCAGGGGAGTCATATTTGCACCTGGAACAGGAATTGTCTCAAAGGTAGCCAGTGTTCAACCAAATTGTTCTCTAACAAGTTCTTTGCCTTCAACTCAAGCATTTTTGAACTCCAATCATGTGAGTAATTTAAGGGCTTCCCAACATGCACCTATTTGTTTGCATGCAGAACCATGCCACGTTTCGCGGCAAACCCCAGTGGCTTTACCATTTCCAATCATGCGTGGCTCTCCAAATGGTGTTTCAAAGGAGCATAAAATCAGGGGTGACCTTCAAGGGTTGGTTTTAACACTGGGAGGACCTACTAGTGGAAATCCTCAGGTGAAATATTGA 1890 0.4333 MSSVVPQVSKNKAMWLHPKVLGFNPSERWGHSACFSNSLMYVFGGCCGGLHFCDVLTLDLNKMVWSKLTTTGEKPGPRDSHSAVLVGHKMIVFGGTNGFKKVNHVHILDLVTKEWVRPEVKGTPPSPRESHTATLVGDERIVIFGGSGEGHANYLNDLHILDLRTMSWTSPELKGDLPVPRDSHSTLAIGDKLIVYGGDSGDQYHGNVHMLDMATMTWSRLTIQGSPPGVRAGHAAVNIGTKVYIIGGVGDKRYYNDVWIFDICNFSWTQLDIPFQQPQGRFSHTAVVAGIDIVIYGGCGEDERPLKELLVLQLGAEHPNGRYYIHMCKPFGTYITRENKIIPGEADTNSKLVRNNVEAFGKGAYEVASEKALPCLFDSGASRQKRRRIAASKVWDVESEQEEKFLSLSLHSSPYQSDQEQTPTQKTNTLFPTTCQHDNDSDDKRTPLKTPRDFHFREHKLKQQQSLYVHEDRKRAQHQAAEQKAMGRGPIQHMIGAEVRGRVNGAFDSGALSPVNGKVFRGVIFAPGTGIVSKVASVQPNCSLTSSLPSTQAFLNSNHVSNLRASQHAPICLHAEPCHVSRQTPVALPFPIMRGSPNGVSKEHKIRGDLQGLVLTLGGPTSGNPQVKY 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02878 629 Gene3D - 121 360 IPR015915 GO:0005515
Cca03g02878 629 SUPERFAMILY Kelch motif 20 263 IPR015915 GO:0005515
Cca03g02878 629 MobiDBLite consensus disorder prediction 412 436 - -
Cca03g02878 629 MobiDBLite consensus disorder prediction 412 452 - -
Cca03g02878 629 Pfam Kelch motif 231 271 IPR006652 GO:0005515
Cca03g02878 629 MobiDBLite consensus disorder prediction 437 452 - -
Cca03g02878 629 Gene3D - 11 120 IPR015915 GO:0005515
Cca03g02878 629 PANTHER KELCH REPEAT DOMAIN 1 623 - -
Cca03g02878 629 Pfam Galactose oxidase, central domain 38 85 - -
Cca03g02878 629 Pfam Galactose oxidase, central domain 87 135 - -
Cca03g02878 629 Pfam Galactose oxidase, central domain 139 189 - -
Cca03g02878 629 PANTHER OS01G0300900 PROTEIN 1 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02878 Cca-Chr3 50095338 50099848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02878 15 486 Acyl Lipid Metabolism Gene Families AT3G05420 28.056 5.01e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02878 K20285 - gmx:100814299 1081.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02878 03 50095338 50099848 Cca02g01412 02 32616733 32621219 PCT