Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01412 ATGGGGTCTCCAGCTGCTGAAACAGCCAAGAAGAAAGCAATGTGGTTGTATCCAAAGGTTTTGGGCTTTAATCCTTCTGAAAGATGGGGGCACTCTGCTTGCTTCTCTGGAGGGCTTATGTATGCGTTTGGGGGGTGTTGTGGGGGGCTACATTTCGAAGATGTGCTGTGTTTGGACCTTGACAAAATGGATTGGAGCAAGTTGGCTACCAAGGGTGAAAAGCCAGGCCCTAGAGATAGCCATAGTGCTGTTCTTGTAGGGCACAGAATGATAGTGTTTGGTGGCACAAATGGGTTCAAGAAGGTGAATGACACTCGCATATTGGATCTTGTTACCAAAGAGTGGATTCGTCCTAAATGTGAAGGGGTTCCTCCTTCTCCAAGGGAAAGCCACACTGCCACTCTAGTTGGTGATCAAAGACTAGTGATTTTTGGTGGTAGTGGAGAAGGTGACGCAAACTATTTAAATGATTTACATATTCTAGACCTAAGGACCATGAGGTGGACTTCTCCTTTAGTCAAAGGTGATTTGCCTGTTCCTAGGGACAGTCATAGCACTGTTGCAGTTGGGAACAAGCTTATTGTGTATGGTGGAGACTGTGGTGATCAGTATCAGGGTGATGTTCATGTGTTTGACATGGATACAATGACTTGGTCAAGGTTGAAAATTCAAGGCTCTTCCCCCGGAATAAGGGCAGGTCATGCAGCTACGAGTATTGGAACCAAGGTGTACATCATTGGAGGGGTGGGAGATAAACGTTATTATAATGACGCCTGGGTGTTTGATATTTGCACTTGTTCGTGGACTCAGCTTGATGTACGAGGTCAAGCGCCACAGGGGCGATTTTCTCACACAGCTATTGTAGTAAACATGGATATCGCCATATATGGCGGCAGTTGTGGGGAAGATGAACGTCCTTTGAACGAATTGTTAGTGTTGCAACTTGGATCAGGCCATCCAAATGGACGTTACAACATTTCCATGTGCAAAGATTTTGGAACTTATTGGAATCAAGAAAAGAGGACCATACCTAGAGTAACAGATACCAACTCGACAACTCCACGTACGGGGAATGAAGTAGAAGTCTTGGGAAAATGGGCTTATGAAGTTGTTTCGCATAAAGGGCAACCTTGTCATTTCGATTCTGGCACTTCGCAACAGAAGAGGAGGAGAATTGCTGTTGCAAAGGTGTGGGATGTTGAATCAGAACAAGAAGAACATTCTCTTTCACTGTCCCAGCATTCATCCCCATCTCAATCTGATCAAGAACTGACACCAGGTCAAAGAACAAATGTTTCTGTCATGGATTCTCAGCGGTATCATTGGTTCAAACATATCAATAAAAGTCCAAGTAATAGCCAGCTAAACAATGTCTTGAGTAACAACACAGTTTTGAAGAATACCACACAAAGAAGTCCTCGTCTCGTGGAACATCAACCAAATCAGTATGTTCATGTTGATGAGGATAGAAAAGGAGCTCGAGACAACCAACACATGATTGGTGCTGAAGTTCGGGGGAAAGTTGATGGAGCCTTTGATTCAGGTTTACTCATGACTGCAGCTGTGAATGGAAGAGTTTTCAGAGGAGTCTTATTTCCACCTGGAGCAGGAGTTTTTTCCAAATGTGTTGAGCCAAACTGTTCTTTATCATGCTCATTTCCCTCCACTCAACAATTTATGAACTCAAATCATGTGAGAGATTCCAAGCAAGTATGCCATGGTGGCTTGAGGCAACCTGTGCTAGCTCAACCATCACCAATCATGAGAGGCACAACCAAAGAGAATAAAATGAGGAGTGACCTTCAAGGGTTGGTTTTGACACTTGGAGGGCCTGCAAGTGGCAACCATGCTTGA 1854 0.4439 MGSPAAETAKKKAMWLYPKVLGFNPSERWGHSACFSGGLMYAFGGCCGGLHFEDVLCLDLDKMDWSKLATKGEKPGPRDSHSAVLVGHRMIVFGGTNGFKKVNDTRILDLVTKEWIRPKCEGVPPSPRESHTATLVGDQRLVIFGGSGEGDANYLNDLHILDLRTMRWTSPLVKGDLPVPRDSHSTVAVGNKLIVYGGDCGDQYQGDVHVFDMDTMTWSRLKIQGSSPGIRAGHAATSIGTKVYIIGGVGDKRYYNDAWVFDICTCSWTQLDVRGQAPQGRFSHTAIVVNMDIAIYGGSCGEDERPLNELLVLQLGSGHPNGRYNISMCKDFGTYWNQEKRTIPRVTDTNSTTPRTGNEVEVLGKWAYEVVSHKGQPCHFDSGTSQQKRRRIAVAKVWDVESEQEEHSLSLSQHSSPSQSDQELTPGQRTNVSVMDSQRYHWFKHINKSPSNSQLNNVLSNNTVLKNTTQRSPRLVEHQPNQYVHVDEDRKGARDNQHMIGAEVRGKVDGAFDSGLLMTAAVNGRVFRGVLFPPGAGVFSKCVEPNCSLSCSFPSTQQFMNSNHVRDSKQVCHGGLRQPVLAQPSPIMRGTTKENKMRSDLQGLVLTLGGPASGNHA 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01412 617 PANTHER KELCH REPEAT DOMAIN 1 615 - -
Cca02g01412 617 MobiDBLite consensus disorder prediction 405 428 - -
Cca02g01412 617 Gene3D - 9 218 IPR015915 GO:0005515
Cca02g01412 617 MobiDBLite consensus disorder prediction 409 428 - -
Cca02g01412 617 Pfam Galactose oxidase, central domain 37 85 - -
Cca02g01412 617 Gene3D - 219 435 IPR015915 GO:0005515
Cca02g01412 617 Pfam Galactose oxidase, central domain 231 278 - -
Cca02g01412 617 Pfam Galactose oxidase, central domain 127 178 - -
Cca02g01412 617 SUPERFAMILY Kelch motif 20 170 IPR015915 GO:0005515
Cca02g01412 617 Pfam Kelch motif 180 221 - -
Cca02g01412 617 PANTHER OS01G0300900 PROTEIN 1 615 - -
Cca02g01412 617 SUPERFAMILY Kelch motif 123 317 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01412 Cca-Chr2 32616733 32621219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01412 15 434 Acyl Lipid Metabolism Gene Families AT3G05420 30.159 2.72e-38 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01412 K20285 - gmx:100787222 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01412 02 32616733 32621219 Cca02g01412 02 32616733 32621219 ECH
Cca03g02878 03 50095338 50099848 Cca02g01412 02 32616733 32621219 PCT