Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02874 ATGTCTGTGGTGGTGGGTGAAGAGGTGAGGCAGAGAGCAGAGGTGTACCATGGAGACGAAATCTGCCAAGTGAAGTCGAAGGAGCTGCTGAAGGAAATCGCTCTCCCCAACGGTCTCCTTCCTCTCAAGGACGTCGAGGAGTGCGGCTACGACAGGGAGTCTGGCTTCGTCTGGCTCAAGCAGAAGAAGAGCTTCACTCACAAGTTCGACAAAATCGGAAAGCTGGTGTCCTACGCCCCAGAGGTCACTGCCCATGTTGAGAAGGGGAAGATCTCTAAACTCACGGGGGTCAAGTCCAAGGAGTTCTTGCTTTGGATCACTCTCAGCGACATCTACGTCGATGACCCCCCCACTCATAACATTACCTTCAAGACCCCCGCTGGCCTCTCTAGGCAATACCCTATCTCCGCCTTTCAGATTGAGGAACCCCAAATCAATGAACTCTGA 447 0.5324 MSVVVGEEVRQRAEVYHGDEICQVKSKELLKEIALPNGLLPLKDVEECGYDRESGFVWLKQKKSFTHKFDKIGKLVSYAPEVTAHVEKGKISKLTGVKSKEFLLWITLSDIYVDDPPTHNITFKTPAGLSRQYPISAFQIEEPQINEL 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02874 148 Pfam Protein of unknown function, DUF538 27 139 IPR007493 -
Cca03g02874 148 PANTHER T31J12.3 PROTEIN-RELATED 4 146 IPR007493 -
Cca03g02874 148 PANTHER PLANT/F25P12-18 PROTEIN 4 146 - -
Cca03g02874 148 Gene3D - 7 147 IPR036758 -
Cca03g02874 148 SUPERFAMILY At5g01610-like 7 143 IPR036758 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02874 Cca-Chr3 50031637 50032251 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02874 - - vra:106757663 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02874 03 50031637 50032251 Cca02g01405 02 32542188 32542958 PCT