Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02871 ATGATCGCCATCAACCTCATTTGCAATTGCACCATGAAACCGTCTCCTAAGATTCTCATTGGATACAAGAATTCATCGTTTCTCGCGAGATGTCACCATACTCGTACTATGTCCATGTCTAACTCCACCACGTGTGGCCTCAACCTCGATCACAGCACCATGCACTGCCCCTTCCACACGCGCGAGTTTGGACGCATCATGCATGGTAGTAACCAACAAGTTTTCGGGTTACCCTCTTCGAGTTTTGGCCAATCAATGTCCCTCAGCACATCGAGAAGAACAAAACGGGGCGTGTCTGCCGTTGCTGGAGTTGACATCAACTTCAAGGCTCGTGACTTCTCGGGCTCCGTCGAAACACGTGTCAATGACAGCAACGGTGACATGGTTTACGTAAAGGGTGGCATGAATGTGAAGCCAGTAGTGGCGGAAAGTGGTGACAAAGATGAGGGTGATGTTGGGGAAGAATCTCGGTTAGAAGTTGGTGAGGAAGATGAGAAGACACAGAATTCGTGTGGTTTAGAGAATGTGGATGAGGCCAATAATGTGGAAGAGGAGACAGAAGTGGAGAAAGAGGCGTGGAAGTTGTTGCAAGAGGCACTTGTGACGTATTGTGACACCCCTGTGGGGACGGTGGCAGCAAATGATTCGACTAGCGAGCAACTTTTGAATTATGATCAGGTTTTCATTCGGGACTTCATCCCTTCTGCTCTTGCTTTCTTGCTCAAAGGAGAAAGGGAAATTGTCAAGAACTTTCTTCTTCACACCTTGCAACTCCAGAGTTGGGAGAAAACAGTGGACTGCTATAGCCCAGGGCAGGGCTTGATGCCTGCTAGTTTCAAAGTTAAAACCAAGGAATTTGAAGAAGGAAAGACAGAAGAAGTTTTAGATCCTGATTTTGGGGAATCAGCTATTGGTCGTGTTGCTCCTGTTGATTCAGGATTATGGTGGATCCTCCTGCTGCGGGCTTATGGGAAGATTACTGGGGACTACAGCTTGCAAGAAAGGTTGGATGTTCAAACAGGCTTGAGAATGATCCTTAACTTGTGTTTAACGGATGGATTCGATATGTTTCCTTCCCTGTTAGTAACTGATGGTTCTTGCATGATAGACAGGAGGATGGGTATTCATGGCCACCCCCTTGAGATTCAAGCTTTATTTTACTCGGCTCTTCGCTCCGCACGTGAGATGGTTGTTGAAGATGAAAGTTCCAAGAAACTAGTTGGAGAAATTAACAACAGACTGAGTGCACTATCATTCCACATTAGAGAATACTATTGGGTGGATATGCGAAAGATAAATGAGATATACAGGTACAAAACAGAAGAGTACTCATTGGATGCCACAAACAAGTTCAACATCTATCCAGAACAAATTCCTTTGTGGCTAATGGATTGGATTCCAGAAGAAGGAGGATATCTGATAGGGAATCTGCAGCCAGCTCACATGGATTTCAGGTTTTTCATGCTTGGAAATCTTTGGTCTGTTGTTTCCTCTTTGGGCACCCCAAGGCAGAATAATGCTATTTTGAATCTGATTGAAGCAAAATGGGAAGATCTCGTTGGCCAAATGCCTCTTAAGATATGTTATCCTGCCTTGGAGGATGAAGAATGGCGATTAATTACAGGCTGTGACCCAAAGAATACCCCTTGGTCATATCACAATGGTGGCTCTTGGCCAACCCTTCTGTGGCAGTTCACACTTGCATGCATGAAAATGGAGAGAACCGAACTAGCCGAGAAAGCAGTTGCTTTGGCTGAGAAAAGGCTGCCAGAAGATTCTTGGCCCGAATATTATGACACACGCTCAGCAAGATTTATTGGCAAACAAGCTCGGCTCTATCAAACATGGACTTTAGCAGGGTTCCTTGCATCTAAGATGCTTTTGAAGAATCCTAAACTGGCTTCCTTGTTATGCTGGGAAGAGGACTTTGAGATTCTTGAGACATGTGTTTGTTTACTTAATAAGAGTGGCAGGATCAAATGCTCCCGTGATGCTGCAAAGTCTCAGATTCTCGTGTGA 2019 0.4512 MIAINLICNCTMKPSPKILIGYKNSSFLARCHHTRTMSMSNSTTCGLNLDHSTMHCPFHTREFGRIMHGSNQQVFGLPSSSFGQSMSLSTSRRTKRGVSAVAGVDINFKARDFSGSVETRVNDSNGDMVYVKGGMNVKPVVAESGDKDEGDVGEESRLEVGEEDEKTQNSCGLENVDEANNVEEETEVEKEAWKLLQEALVTYCDTPVGTVAANDSTSEQLLNYDQVFIRDFIPSALAFLLKGEREIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVKTKEFEEGKTEEVLDPDFGESAIGRVAPVDSGLWWILLLRAYGKITGDYSLQERLDVQTGLRMILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRSAREMVVEDESSKKLVGEINNRLSALSFHIREYYWVDMRKINEIYRYKTEEYSLDATNKFNIYPEQIPLWLMDWIPEEGGYLIGNLQPAHMDFRFFMLGNLWSVVSSLGTPRQNNAILNLIEAKWEDLVGQMPLKICYPALEDEEWRLITGCDPKNTPWSYHNGGSWPTLLWQFTLACMKMERTELAEKAVALAEKRLPEDSWPEYYDTRSARFIGKQARLYQTWTLAGFLASKMLLKNPKLASLLCWEEDFEILETCVCLLNKSGRIKCSRDAAKSQILV 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02871 672 MobiDBLite consensus disorder prediction 142 170 - -
Cca03g02871 672 SUPERFAMILY Six-hairpin glycosidases 192 623 IPR008928 GO:0005975
Cca03g02871 672 MobiDBLite consensus disorder prediction 141 170 - -
Cca03g02871 672 PANTHER - 5 672 IPR024746 GO:0033926
Cca03g02871 672 Gene3D - 210 619 IPR012341 GO:0005975
Cca03g02871 672 PANTHER ALKALINE/NEUTRAL INVERTASE 5 672 - -
Cca03g02871 672 Pfam Alkaline and neutral invertase 192 631 IPR024746 GO:0033926
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02871 Cca-Chr3 49983247 49990873 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02871 - - gmx:100812691 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02871 03 49983247 49990873 Cca02g01403 02 32511257 32515214 PCT