Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02867 ATGTTCAGACATTTCACTTTTGTAAGAGTTAGAAAATTGAAGAACACCCCAATCTATGTGAAGCCACAGTTGACTTCAGAAGGTGGAACATGCCGTCTTAGTGTATTGGTTGGAATAAGAAATGATCCCGAAAAGACAATTGACTTTGTTACTGTTGAGTTTCAGCTTCCTTCTTGCATCTTATCAGCTGATCTGACTTCAAATCATGGAGTAGTAAACATTATTGGTAACAAGACATGCTCTTGGTCCATTGGTCGGATCCCAAACGATAAAGCCCCTTCAATGTTTGGAACATTGGTGCTAGAGACTGGATTGGAGCATCTTCATGTGTTTCCCACATTTCAAATGGGTTTTAGGATTATGGATGTTGCTCTATATTGTCTGCAAATAGATAAACTGGATCTGAAGACTGTACCTTATCGTTTTTATAAAGGTTTTCGAGCTCTTACCGAGGCAGGTGAATTAGAAGTCAGGTCATGA 480 0.3917 MFRHFTFVRVRKLKNTPIYVKPQLTSEGGTCRLSVLVGIRNDPEKTIDFVTVEFQLPSCILSADLTSNHGVVNIIGNKTCSWSIGRIPNDKAPSMFGTLVLETGLEHLHVFPTFQMGFRIMDVALYCLQIDKLDLKTVPYRFYKGFRALTEAGELEVRS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02867 159 Pfam Adaptor complexes medium subunit family 10 158 IPR028565 -
Cca03g02867 159 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 9 158 IPR036168 -
Cca03g02867 159 PANTHER CARMINE, ISOFORM A 5 158 - -
Cca03g02867 159 ProSiteProfiles Mu homology domain (MHD) profile. 1 158 IPR028565 -
Cca03g02867 159 Gene3D Mu homology domain, subdomain B 16 122 - -
Cca03g02867 159 PANTHER AP COMPLEX SUBUNIT MU 5 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02867 Cca-Chr3 49967323 49967930 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02867 K12398 - ccaj:109797761 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02867 03 49967323 49967930 Cca02g01402 02 32507298 32510000 PCT