Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01402 ATGTTGCAGTGCATATTTCTCGTCTCAGATGCCGGAGAGTTAATGCTGGAGAAGCAGCTCACGGGGCACCGCCTGGATCGCTCCATTTGTGCCTGGTTCTGGGAACAAACCATTTCACTAGGCGACTCCTTCAAGCAACAACCAGTGATTGCCTCTCCCACGCATTATATTTTCCATGTTTTTCGCGAGGGAATCACTTTTCTGGGGTGCACGCAAGTTGAAATGCCACCCTTAATGGCCATTGAGTTTCTTTGTAGGGTAGCTGATGTCCTCAATGATTATTTTGGGGCATTGAATGAAGACATAGTTAAAGACAACTTTGTCATTGTGTATGAGCTGTTGGATGAGATGATAGACAATGGCTTCCCCTTAACTACAGAACCTAGTATCCTGCGAGAGATGATTGCTCCACCGAATATGGTTAACAAAGCCTTGAGCATTGTGACTGGTAACAGTTCAAATGTGAGTGAAACCCTTCCTGCGGCTACTGCATCTTGTATTCCATGGAGAACAGCAGAGCCAAAGTACGCCAACAATGAAGTCTATGTAGACCTTGTTGAAGAAATGGATGTGATTGTAAGCAGGGATGGGGGCTTGGTGAAATGTGAGATCTATGGTGAAGTTCAAGTAAATTCACGGATCTCAGGTCTTCCTGATTTAACCCTTTCATTTACAAATCCTTCCATCCTTGATGATGTGAGGTTCCATCCCTGTGTTCGATTTCGGCCTTGGGAGTCTCATCAAATTCTTTCTTTTGTGCCTCCTGATGGACAGTTTAAGCTGATGAGTTACAGAGTTAGAAAGTTGAAGAGCACCCCAATATATGTAAAGCCACAGTTAACTTCAGATGGTGGGACATGCCGTGTTAGTGTATTGGTTGGAATAAGAAATGATCCTGGAAAGACAATTGACTCCGTCACTGTTCAGTTTCAGCTCCCTCCTTTCATATTATCAGCTGATCTGACTTCTAACCATGGAACAGTAAACATCCTTGCTAAAAAGACATGCATATGGTCCATTGATCGAATCCCAAAAGATAAAGCTCCTTCCCTGTCTGGAACATTAGTGATTGAAACTGGATTGGATCGCCTTCATGTCTTCCCTACATTTCAAGTTGGTTTTAGGATAATGGGTGTTGCCCTCTCTGGTCTGCAAATAGATAAATTGGATCTGAAGACTGTACCATACCGATTTTACAAAGGTTTTCGAGCTCTTACTCGGGCAGGTGAATTTGAAGTCAGATCATAA 1248 0.4327 MLQCIFLVSDAGELMLEKQLTGHRLDRSICAWFWEQTISLGDSFKQQPVIASPTHYIFHVFREGITFLGCTQVEMPPLMAIEFLCRVADVLNDYFGALNEDIVKDNFVIVYELLDEMIDNGFPLTTEPSILREMIAPPNMVNKALSIVTGNSSNVSETLPAATASCIPWRTAEPKYANNEVYVDLVEEMDVIVSRDGGLVKCEIYGEVQVNSRISGLPDLTLSFTNPSILDDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLTSDGGTCRVSVLVGIRNDPGKTIDSVTVQFQLPPFILSADLTSNHGTVNILAKKTCIWSIDRIPKDKAPSLSGTLVIETGLDRLHVFPTFQVGFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01402 415 Gene3D - 1 142 - -
Cca02g01402 415 CDD AP-3_Mu3_Cterm 167 414 - -
Cca02g01402 415 PRINTS Clathrin coat assembly protein signature 100 127 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca02g01402 415 PRINTS Clathrin coat assembly protein signature 230 257 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca02g01402 415 PRINTS Clathrin coat assembly protein signature 337 348 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca02g01402 415 PANTHER CARMINE, ISOFORM A 8 414 - -
Cca02g01402 415 SUPERFAMILY SNARE-like 1 142 IPR011012 -
Cca02g01402 415 ProSiteProfiles Mu homology domain (MHD) profile. 178 414 IPR028565 -
Cca02g01402 415 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 167 414 IPR036168 -
Cca02g01402 415 Pfam Adaptor complexes medium subunit family 167 414 IPR028565 -
Cca02g01402 415 Gene3D Mu homology domain, subdomain B 167 410 - -
Cca02g01402 415 PANTHER AP COMPLEX SUBUNIT MU 8 414 - -
Cca02g01402 415 PIRSF AP_complex_mu 1 415 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca02g01402 415 Gene3D Mu homology domain, subdomain B 272 413 - -
Cca02g01402 415 CDD AP3_Mu_N 3 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01402 Cca-Chr2 32507298 32510000 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01402 K12398 - gmx:100782926 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01402 02 32507298 32510000 Cca02g01402 02 32507298 32510000 ECH
Cca03g02867 03 49967323 49967930 Cca02g01402 02 32507298 32510000 PCT