Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02864 ATGGCACCCAATATCACCACCGTTGCCACCACTGAGCAAGCCAAAGTTGGTGGCGGAAATGGACGTGCCTTCGTCACGTTTCTTGCTGGGAACGGTGATTACGTAAAGGGTGTTGTTGGTTTGGCCAAAGGATTGAGAAAGGCCAAAAGCAAGTACCCTTTGGTGGTTGCTGTGTTACCTGATGTTCCTGAGGAACACCGTAAGATTCTTGTTTCCCAAGGTTGCATTGTTAGGGAGATTGAACCTGTGTATCCCCCTGAGAACCAGACACAGTTCGCCATGGCCTATTATGTCATCAATTACTCCAAGCTTCGTATCTGGGAGTTTGTGGATTTCAACAAGATGATATACTTAGACGGTGACATCCAAGTTTTTGGAAACATCGACTACTTGTTTGATTTGCCTGATAACTATTTCTATGCGGTGATGGATTGTTTCTGTGAGAAGACTTGGAGCCATACCCCTCAATACCAAATTGGCTACTGCCAACAATGCCCTCACAAGGTTCAATGGCCCTCTCACTTTGGGCCTAAGCCCCCTCTATATTTCAACGCTGGAATGTTTGTTTATGAGCCCAATTTGGCCACTTACCATGATCTTCTCCAAACAGTCCAACTCACTAAGCCCACTTCCTTTGCAGAGCAGGATTTCCTGAACATGTACTTCAAGGACAAATACAAGCCCATACCAAACATGTACAACCTTGTGCTAGCCATGTTGTGGCGTCACCCAGAGAATGTTGACCTTGACAAAGTTCAAGTGGTTCACTATTGTGCTGCAGGTTCTAAGCCTTGGAGGTTCACTGGGAAGGAGGAGAACATGGATAGGGAAGATATCAAGATGCTTGTAAAGAAGTGGTGGGACATATACGAGGATGAGACATTGAACTTCAATAACAACGTTGTCAACATGGAACGCTTCACGAAAGCGATGTTGGAGGCCCGTGGCATTCAATATGTGCCAGCCCCTTCTGCTGCCTAA 981 0.4608 MAPNITTVATTEQAKVGGGNGRAFVTFLAGNGDYVKGVVGLAKGLRKAKSKYPLVVAVLPDVPEEHRKILVSQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVDFNKMIYLDGDIQVFGNIDYLFDLPDNYFYAVMDCFCEKTWSHTPQYQIGYCQQCPHKVQWPSHFGPKPPLYFNAGMFVYEPNLATYHDLLQTVQLTKPTSFAEQDFLNMYFKDKYKPIPNMYNLVLAMLWRHPENVDLDKVQVVHYCAAGSKPWRFTGKEENMDREDIKMLVKKWWDIYEDETLNFNNNVVNMERFTKAMLEARGIQYVPAPSAA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02864 326 PANTHER GLYCOGENIN SUBFAMILY MEMBER 1 326 - -
Cca03g02864 326 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 20 296 IPR029044 -
Cca03g02864 326 Pfam Glycosyl transferase family 8 26 267 IPR002495 GO:0016757
Cca03g02864 326 SUPERFAMILY Nucleotide-diphospho-sugar transferases 25 293 IPR029044 -
Cca03g02864 326 PANTHER GALACTINOL SYNTHASE 2 1 326 IPR030515 GO:0006012|GO:0047216
Cca03g02864 326 CDD GT8_Glycogenin 22 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02864 Cca-Chr3 49952124 49955052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02864 1 326 Glycosyltransferase AT1G56600 76.119 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02864 K18819 - gmx:100800249 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02864 03 49952124 49955052 Cca02g01399 02 32489585 32491238 PCT