Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01399 ATGGCCCCTGATATGATCAGCACCCTCACTGATGCTCAAGCTAAGGCCAGCGGCGGTCTTGGCCGTGCCTACGTCACCTTCCTCGCCGGTAACGGCGACTACGTGAAAGGTGTTGTTGGCTTGGCCAAAGGTCTGAGGAAGGTGAAGAGCATGTACCCTTTGGTGGTTGCAGTGTTACCCGATGTTCCCCAAGAGCACCGCAACATTCTCATCACTCAGGGTTGCATTGTTAGAGAGATTGAGCCTGTGTACCCCCCTAAGAACCAAACACAGTTTGCCATGGCATATTACGTCATCAACTATTCCAAGCTACGTATTTGGGAGTTTGTGGAGTATAGTAAGATGATTTACCTAGACGGTGATATCCAAGTTTTTAGCAACATTGACCACTTGTTTGATTTGCCTGATGATTACTTCTACGCGGTGATGGACTGTTTCTGCGAGCCCACTTGGGCCCACACTCCGCAGTTTCAGATCGGTTACTGCCAGCAGTGCCCTGATAAGGTTCAGTGGCCCTCTGATTTTGGGCCCAAGCCTCCTCTCTATTTCAATGCTGGCATGTTTGTTTATGTGCCCAATTTGGATACCTACCATGATCTTCTTCAAACAGTCCAAGTCACCAAGCCCACTTCCTTTGCTGAACAAGATTTTTTGAACATGTACTTCAAGGACAAATATAGGCCCATACCAAATGTCTACAATCTTGTGCTGGCCATGCTGTGGCGTCACCCTGAGAATGTTGAGCTTGACAAAGTCAAAGTGGTTCACTATTGTGCTGCTGTGAGTGTTCAATTCTAA 798 0.4774 MAPDMISTLTDAQAKASGGLGRAYVTFLAGNGDYVKGVVGLAKGLRKVKSMYPLVVAVLPDVPQEHRNILITQGCIVREIEPVYPPKNQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFSNIDHLFDLPDDYFYAVMDCFCEPTWAHTPQFQIGYCQQCPDKVQWPSDFGPKPPLYFNAGMFVYVPNLDTYHDLLQTVQVTKPTSFAEQDFLNMYFKDKYRPIPNVYNLVLAMLWRHPENVELDKVKVVHYCAAVSVQF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01399 265 Pfam Glycosyl transferase family 8 26 259 IPR002495 GO:0016757
Cca02g01399 265 CDD GT8_Glycogenin 22 260 - -
Cca02g01399 265 PANTHER GLYCOGENIN SUBFAMILY MEMBER 1 262 - -
Cca02g01399 265 PANTHER GALACTINOL SYNTHASE 2 1 262 IPR030515 GO:0006012|GO:0047216
Cca02g01399 265 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 21 261 IPR029044 -
Cca02g01399 265 SUPERFAMILY Nucleotide-diphospho-sugar transferases 24 259 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01399 Cca-Chr2 32489585 32491238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01399 1 260 Glycosyltransferase AT1G56600 78.927 8.51e-158 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01399 K18819 - gmx:100804007 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01399 02 32489585 32491238 Cca02g01399 02 32489585 32491238 ECH
Cca03g02864 03 49952124 49955052 Cca02g01399 02 32489585 32491238 PCT