Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02858 ATGGGAGTGGTGACTGTTGGTGAATTGAAGCCTAGCGTTTCAGGAAAAAGGACTTTTCGTCCAAGTTCAAGCATAAGACATGCCACTGAATGGCCAATATCCGATGTCTCTAGTGATCTTACCATCGAAGTTGGAGCATCAACCTTCGCACTTCACAAGTTTCCTCTCGTTTCTCGGAGTGGAAGAATTCGGAAGCTGCTGTTAGAAGCAAAAGATTCAAAAGTTTTACGCATAAGTCTCCCAAATGTGCCAGGTGGTGCAGAGGCATTTGAGCTAGCTGCCAAATTCTGCTATGGGATCAATGTTGAGTTCTCACTCTCAAATGTTGCTTTGCTGCGTTGCGCAGCACATTTTCTTGAGATGACAGAAGAATTCGCAGATAAAAACTTGGAGGCCAGAGCTGAAGCGTATCTAAGGGACACAGTGCTCCCTAACATATCAAGCACAGTACACGTTCTTCACTGTTGTGAGGCTCTTCTTCCAATGTCAGAAGAGATAAACCTTGTTAACAAGCTAATCAATGCAATTGCAAACAACGCGTGCAAGGAGCAACTTACATCTGGTTTACTAAAACTCGATCACACTCACACTTTCCCTTCTAAGACCATACCAACCATGGAACCAGAAACACCCTCAGATTGGTGGGGAAAGTCTTTTAATGTTCTTAGCCTTGAGTTCTTCCAACGAGTTGTGTCTGTTGTGAAGTCAAAGGGACTAAAACAAGACATGATCAGCAAGATTTTGATGAACTATGCACACGGTTCTCTTCAGGGGGTTGGTGTTAGAGACCCCCAAGTGGTGAAAGGAAGTATACATGACATGGAATTGCAAAAGAAACAAAGGGTGATTGTTGAAACCATAGTTGGCTTGCTTCCAACACAGTCAAGGAAAAGCCCCGTTCCAATGGGATTCCTCTCAAGTTTGTTGAAAGCTGCAATAGCAACATCTGCATCAACTCCTTGCAGATCTGATTTGGAGAGGCGAATTGGTCTGCAACTTGACCAAGCAATTCTTGAAGACATCTTAATCCCAACAAACTCGCCTCAAAACACGCACAACACAATGTATGACACAGACTCAATTCTGAGGATCTTTTCTATGTTTCTAAACTTGGACGAGGAAGATGGCGAAGATAGTGACAACTTCATTGATGAAAGCCAAATGATGTATGATTTTGACAGTCCTGGATCTCCCAAACAAAGCTCAATCATAAAGGTATCcaaattacttgacagttatctcgctgaagtagcactagacccaaacttgttgccttcaaaattcacagcactttcagaactgcttccagatcatgcacgtatcgttagtgatggactctatagagctgttgacatCTTCCTTAAGGTTCACCCAAACATGAAGGACTCAGAGAGGTACCGGTTATGCAAAACCATTGATTGTCAGAAACTGACACAAGAAGCATGCAGCCATGCAGCACAGAATGAAAGGCTACCAGTGCAGATGGCAGTTCAAGTCCTTTACTTCGAGCAAATGAGGCTTCGCAATGCCATGAATGGAGGGCACAACCAACTCTTCTTTGGCCAGTTCCCTCAACGTTCAGGGAGTGGTGCAGGGAGTGGAGCCATTTCCCCTAGAGATAACTATGCATCGGTTAGAAGAGAGAACCGAGAACTGAAGCTTGAAGTTGCAAGAATGAGAATGAGGCTCACTGACTTGGAGAAAGACCACGTGTCCATGAAGCAGGAGCTTGTGAAGTCTCACCCTGCGAACAAGTTGTTCAAATCATTCACCAGAAAGCTGAGCAAGCTCAATGCTCTATTCAGGATAAATAGCATTAAACCAATTGGTGGTTCAGAAACTCGCTTCCCTTTTCCAAAGCGAAGACGCCACTCCGTTTCATGA 1884 0.4103 MGVVTVGELKPSVSGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASTFALHKFPLVSRSGRIRKLLLEAKDSKVLRISLPNVPGGAEAFELAAKFCYGINVEFSLSNVALLRCAAHFLEMTEEFADKNLEARAEAYLRDTVLPNISSTVHVLHCCEALLPMSEEINLVNKLINAIANNACKEQLTSGLLKLDHTHTFPSKTIPTMEPETPSDWWGKSFNVLSLEFFQRVVSVVKSKGLKQDMISKILMNYAHGSLQGVGVRDPQVVKGSIHDMELQKKQRVIVETIVGLLPTQSRKSPVPMGFLSSLLKAAIATSASTPCRSDLERRIGLQLDQAILEDILIPTNSPQNTHNTMYDTDSILRIFSMFLNLDEEDGEDSDNFIDESQMMYDFDSPGSPKQSSIIKVSKLLDSYLAEVALDPNLLPSKFTALSELLPDHARIVSDGLYRAVDIFLKVHPNMKDSERYRLCKTIDCQKLTQEACSHAAQNERLPVQMAVQVLYFEQMRLRNAMNGGHNQLFFGQFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKSHPANKLFKSFTRKLSKLNALFRINSIKPIGGSETRFPFPKRRRHSVS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02858 627 Coils Coil 542 576 - -
Cca03g02858 627 Pfam BTB/POZ domain 37 122 IPR000210 GO:0005515
Cca03g02858 627 Gene3D Potassium Channel Kv1.1; Chain A 26 142 IPR011333 -
Cca03g02858 627 Pfam NPH3 family 213 482 IPR027356 -
Cca03g02858 627 ProSiteProfiles NPH3 domain profile. 213 506 IPR027356 -
Cca03g02858 627 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Cca03g02858 627 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 620 - -
Cca03g02858 627 PANTHER OS12G0117600 PROTEIN 25 620 IPR043454 -
Cca03g02858 627 SUPERFAMILY POZ domain 22 123 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02858 Cca-Chr3 49909387 49913537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02858 1 456 EF-hand Containing Proteins AT2G47860 59.794 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02858 - - gmx:100776688 1150.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02858 03 49909387 49913537 Cca03g02858 03 49909387 49913537 ECH
Cca03g02858 03 49909387 49913537 Cca02g01201 02 29675799 29681249 PCT