Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01201 ATGGGAGTTGTCACTGTTGGAGAATTGAAGCCCAGCATCTCAGGGAAGAGGACCTTTCGTCCAAGTTCAAGCATAAGGCATGCCACTGAATGGCCCATATCTGATGTCTCTAGTGATCTCACCATCGAAGTAGGAGCTTCAAGCTTTGCACTTCACAAGTTTCCTCTTGTTTCTAGGAGTGGAAGAATTCGGAAACTGCTGTTAGAAGCAAAAGATTCAAAAGTTTCACGCGTAAGTCTCCCAAACGTGCCGGGTGGTGCAGAGGCATTTGAGCTGGCGGCCAAATTTTGTTATGGAATCAATGTTGAGTTCACCCTTGCCAATGTTGCCATGATAAAATGTGTAGCTCACTTTCTAGAAATGACAGAAGAATTTGCCGATAAAAACTTGGAGACACGAGCTGAAGCATATCTAAAGGAGACAGTGCTCCCAAATATATCAAGCACAATATCTGTTCTTCACCGTTGTGAAACTCTTGTTCCCACTTCAGAAGAGATTAACCTTGTCAGCAGACTaatcaatgcaattgcaaacaatgcatgcaaAGAGCAGCTTACCACCGGTTTGCAAAAACTGGACCACAACTTCCCTTCTAAAACCACCTCAAACATGGAACCCGAAACACCCTCAGAATGGTGGGGGAAATCTCTCAATGTTCTTAGTCTTGATTTCTTCCAACGAGTTTTAACTGCAGTGAAGTCAAAGGGACTAAAACAAGACATGATCAGCAAAATTTTGATAAACTATGCTCATAATTCTCTTCAAGGGATTGTTATTAGGGACCCTTCAGCAGGGAGAGGAAGTTTACCTGACTTGGAATTGCAAAAGAAACAAAGAGTCATTGTTGAAGCCATTGCTGGCTTACTACCAACTCAATCAAGGAAAAGCCCTGTTCCTATGGCATTTCTTTCAAGTTTGTTGAAAGCTGCAATAGCTGCATCAACATCCACTTCTTGCAGATCTGATTTGGAGAGGAGGATTGGATTGCAACTTGACCAGGCTATTCTTGAAGACATCCTAATCCCAACAAATTCACATCAAAATACTCATGGCACTATTTATGACACAGATTCAATTTTGAGGATTTTTTCAAATTTTCTGAACTTGGATGAGGAGGATGATGAGGATAATAGTcacttgagagatgaaagtgaaatggtttatgactttgacagCCCCGGATCTCCAAAACAAAGCTCAATTCTGAAGGTATCCAAATTGATGGATAACTATCTTGCTGAAGTAGCACTAGACCCCAACTTGTTGCCATCAAAGTTCATATCCCTTGCTGAACTACTTCCAGATCATGCACGTATTGTGAGTGATGGACTCTATAGAGCCGTTGATATCTTCCTTAAGGTTCATCCAAACATAAAGGACTCAGAGCGGTATCGCCTGTGCAAAACCATTGATTGTCAGAAAATGTCTCAAGAAGCATGCAGCCATGCAGCACAAAACGAAAGGCTACCAGTGCAGATGGCAGTTCAGGTTCTATACTTTGAGCAAATAAGGCTTCGCAATGCCATGAATGGAGGGCACAACCAATTCTTCTTTGGAGGACTCAATGGTCAATTCCCTCAACGTTCAGGAAGTGGTGCTGGCAGTGGAGCCATTTCCCCTAGAGACAACTATGCATCAGTTAGAAGAGAAAACCGAGAGCTCAAGCTTGAAGTTGCAAGAATGAGAATGAGGCTCACTGACTTGGAGAAAGATCATGTTAACATGAAGCAGGAGCTAGTAAGGTCTCACCCTGCCAACAAGCTGTTTAAATCACTCACCAAAAAACTAAGCAAACTCAATGCTCTATTTCGGTTAAACAGTATTAAGCCAAATGGTTCCGAGAGTCGCTTCCCTTTTCCTAAGAGAAGGCGTCACTCAGTTTCATGA 1887 0.4102 MGVVTVGELKPSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVSLPNVPGGAEAFELAAKFCYGINVEFTLANVAMIKCVAHFLEMTEEFADKNLETRAEAYLKETVLPNISSTISVLHRCETLVPTSEEINLVSRLINAIANNACKEQLTTGLQKLDHNFPSKTTSNMEPETPSEWWGKSLNVLSLDFFQRVLTAVKSKGLKQDMISKILINYAHNSLQGIVIRDPSAGRGSLPDLELQKKQRVIVEAIAGLLPTQSRKSPVPMAFLSSLLKAAIAASTSTSCRSDLERRIGLQLDQAILEDILIPTNSHQNTHGTIYDTDSILRIFSNFLNLDEEDDEDNSHLRDESEMVYDFDSPGSPKQSSILKVSKLMDNYLAEVALDPNLLPSKFISLAELLPDHARIVSDGLYRAVDIFLKVHPNIKDSERYRLCKTIDCQKMSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGHNQFFFGGLNGQFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVNMKQELVRSHPANKLFKSLTKKLSKLNALFRLNSIKPNGSESRFPFPKRRRHSVS 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01201 628 Gene3D Potassium Channel Kv1.1; Chain A 24 144 IPR011333 -
Cca02g01201 628 Pfam NPH3 family 211 480 IPR027356 -
Cca02g01201 628 Coils Coil 544 578 - -
Cca02g01201 628 Pfam BTB/POZ domain 37 138 IPR000210 GO:0005515
Cca02g01201 628 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 621 - -
Cca02g01201 628 PANTHER OS12G0117600 PROTEIN 25 621 IPR043454 -
Cca02g01201 628 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Cca02g01201 628 SUPERFAMILY POZ domain 22 123 IPR011333 -
Cca02g01201 628 ProSiteProfiles NPH3 domain profile. 211 504 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01201 Cca-Chr2 29675799 29681249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01201 1 454 EF-hand Containing Proteins AT2G47860 59.175 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01201 - - gmx:100814622 1111.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01201 02 29675799 29681249 Cca02g01201 02 29675799 29681249 ECH
Cca03g02858 03 49909387 49913537 Cca02g01201 02 29675799 29681249 PCT