Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02808 ATGACTTTTTCCCTCTTCTGTTGTCTCCTTTTCCTTCTTTCTGTGTTTTCTACCTCTCTTTGTGATTCCCTCCACCACCCTCACTTTGCCACTCACAACTACAGAGATGCTCTCACCAAATCCATTATCTTCTTTGAGGGCCAGAGATCAGGGAAGCTCCCTTCCAACCAGAGATTGTCTTGGAGGAGTCACTCTGGTCTCTCTGATGGCTCGGCCATGCATGTTGATTTGGTTGGAGGGTACTACGATGCTGGAGACAATGTCAAGTTTGGTTTTCCCATGGCCTTCACCACCACCATGCTTTCGTGGAGTGTTGTTGAGTTTGGTGGGGTCATGAAGGGTGAGTTGCAGAATACAAGAGAGGCCATTCGTTGGGCCACAAATTATCTTCTCAAAGCCACTGCACATCCAGACACCATTTATGTTCAGGTGGGAGATGCAGTGAAGGACCACGCTTGTTGGGAGAGACCTGAGGACATGGACACCCCAAGAAGTGTCTTTAAAGTAGATAAAAACAACCCTGGTTCAGATGTGGCTGCAGAAACTGCTGCGGCTCTTGCAGCTGCTTCTCTTGTTTTCAAAAAAACCGACCCCACCTACTCCAAAACTTTGGTTAGGAGGGCTATCCGTGTTTTCCAGTTTGCTGATAAATACAGAGGGCCCTACAGCAATGGCTTGAAGCCCATTGTGTGCCCCTTCTATTGCTCCTACTCTGGTTATCAGGATGAACTGTTGTGGGGTGCTGTTTGGCTTCACAAGGCTACTAAGAACCCAATGTACCTAAACTACATTAATGTAAATGGACAAACCCTTGGGGCTGCAGATTCTGACAATATCTTTGGATGGGATAACAAGCATGTTGGAGCTAGGATACTACTTTCCAAGGAATTTCTTGTTCGGAAGGTGCAATCCCTGCATGACTACAAGGGTCATGCAGACAATTTTATTTGTTCTGTTATCCCTGGCTCCTCTTCTGCTCAATTCACCCCAGGTGGTCTTCTGTTCAAAATGGGTGATAGCAACATGCAATATGTCACGTCCACCTCCTTCTTACTCTTGGCTTATGCTAAATACTTGACCAAGGCCCATATGGTAGTGAACTGTGGTGGAACCACTGTAACTCCAAAGAGGCTCCGAACTATAGCCAAAAAACAGGTGGACTATTTGCTAGGAGACAACCCCTTGAAGATGTCCTATATGGTGGGGTATGGTCCACGTTACCCACGAAGGATACACCACAGGGGCTCATCGCTGCCGTCCATTGGTGTTCACCCTGGGAAAATCCAATGCTCAGCGGGATTCAGCGTGATGAACTCGCAATCACCCAACCCCAACATCCTAGTGGGTGCCGTAGTTGGAGGGCCAGATCTGCATGATAGGTTCCCAGATGAACGGTCAGATTATGAGCAATCAGAACCTGCGACTTATATTAACGCTCCTCTCGTGGGCGCGCTTGCATATCTCGCACACTCGTTTGGCCAACTCTAG 1488 0.4785 MTFSLFCCLLFLLSVFSTSLCDSLHHPHFATHNYRDALTKSIIFFEGQRSGKLPSNQRLSWRSHSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVVEFGGVMKGELQNTREAIRWATNYLLKATAHPDTIYVQVGDAVKDHACWERPEDMDTPRSVFKVDKNNPGSDVAAETAAALAAASLVFKKTDPTYSKTLVRRAIRVFQFADKYRGPYSNGLKPIVCPFYCSYSGYQDELLWGAVWLHKATKNPMYLNYINVNGQTLGAADSDNIFGWDNKHVGARILLSKEFLVRKVQSLHDYKGHADNFICSVIPGSSSAQFTPGGLLFKMGDSNMQYVTSTSFLLLAYAKYLTKAHMVVNCGGTTVTPKRLRTIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIGVHPGKIQCSAGFSVMNSQSPNPNILVGAVVGGPDLHDRFPDERSDYEQSEPATYINAPLVGALAYLAHSFGQL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02808 495 PANTHER ENDO-1,4-BETA-GLUCANASE 4 495 - -
Cca03g02808 495 PANTHER ENDOGLUCANASE 17 4 495 - -
Cca03g02808 495 SUPERFAMILY Six-hairpin glycosidases 31 493 IPR008928 GO:0005975
Cca03g02808 495 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 461 479 IPR033126 -
Cca03g02808 495 Pfam Glycosyl hydrolase family 9 34 485 IPR001701 GO:0004553|GO:0005975
Cca03g02808 495 Gene3D - 30 491 IPR012341 GO:0005975
Cca03g02808 495 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 388 414 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02808 Cca-Chr3 49436706 49439243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02808 23 491 Glycoside Hydrolase AT1G02800 78.936 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02808 K01179 - gmx:100793900 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02808 03 49436706 49439243 Cca03g02808 03 49436706 49439243 ECH
Cca03g02808 03 49436706 49439243 Cca02g01247 02 30404265 30406735 PCT