Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01247 ATGTCCACTCACACCCCTCTCGCATTACCATTTTCTTTTTCCTTATTTCTCTTCATATCTGCATTGCAGGTTGACTTGGTTGGAGGCTACTATGATGCTGGGGACAATGTCAAGTTCGGTTTTCCCATGGCCTTCACCACCACCATGCTTTCTTGGAGCGTCATTGAGTTCGGTGGACTAATGAAAGGTGAGTTGCAGCATGCCAGAGAGGCCATTCGCTGGGCCACCGATTATCTTCTCAAAGCTACTGTACATCCAAACACCATTTATGTTCAGGTGGGAGATGCTAAAAAAGACCACGCTTGTTGGGAGAGACCCGAGGACATGGACACTCCAAGAAGTGTGTTTAAAATAGACGCACACACACCTGGTTCTGAAGTTGCTGCGGAAACTGCGGCAGCTCTTGCAGCTGCTTCTTTGGTTTTCAGAAGAACTGATCCTACATACTCAAAACTTTTAGTGAGGAGGGCCATTAGAGTGTTCCAGTTTGCGGATAAATACAGGGGATCCTACAGCAATGCCTTGAAACCCTTTGTGTGCCCCTTTTATTGCTCTTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCAACCAAGAATCCAATGTACCTAAACTACATTAAAGTCAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCACGCTGGAGCAAGGATACTTCTTTCCAAGGAGTTCCTTGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGCCATGCGGACAATTTCGTATGTTCTCTAATTCCTGGGACCTCTTTCTCTTCTGCCCAATATACCCCAGGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTACTGTTAACATATGCCAAATACTTGACCTCAGCTCATACGCTTGTTAACTGTGGTGGAATCACGGTTACCCCAAAGAGGCTCAGAGCAATAGCCAAGAAACAGGTGGATTACTTGCTTGGGGACAACCCGTTGAGGATGTCGTACATGGTGGGGTATGGTCCTAGGTACCCACGAAGGATACACCATAGAGGCTCATCTCTACCGTCCATTGCTGTGCACCCGGGAAAGATCCAGTGTTCCGCAGGGTTCAGTGTGATGAATTCACAATCCCCTAACCCAAACATTCTAGTGGGGGCCATTGTTGGTGGACCGGATCAACATGATAGGTTCCCGGATGAACGGTCAGATTATGAGCAATCAGAGCCAGCTACGTATATTAACTCACCCCTTGTAGGAGCACTCGCGTATCTTGCACACTCATCTGGTCAACTCTAG 1341 0.4787 MSTHTPLALPFSFSLFLFISALQVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELQHAREAIRWATDYLLKATVHPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKIDAHTPGSEVAAETAAALAAASLVFRRTDPTYSKLLVRRAIRVFQFADKYRGSYSNALKPFVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQILGAAEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKGHADNFVCSLIPGTSFSSAQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSAHTLVNCGGITVTPKRLRAIAKKQVDYLLGDNPLRMSYMVGYGPRYPRRIHHRGSSLPSIAVHPGKIQCSAGFSVMNSQSPNPNILVGAIVGGPDQHDRFPDERSDYEQSEPATYINSPLVGALAYLAHSSGQL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01247 446 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 339 365 IPR018221 -
Cca02g01247 446 Gene3D - 17 446 IPR012341 GO:0005975
Cca02g01247 446 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 412 430 IPR033126 -
Cca02g01247 446 SUPERFAMILY Six-hairpin glycosidases 19 443 IPR008928 GO:0005975
Cca02g01247 446 PANTHER ENDO-1,4-BETA-GLUCANASE 20 446 - -
Cca02g01247 446 PANTHER ENDOGLUCANASE 17 20 446 - -
Cca02g01247 446 Pfam Glycosyl hydrolase family 9 22 436 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01247 Cca-Chr2 30404265 30406735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01247 43 446 Glycoside Hydrolase AT4G02290 82.426 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01247 K01179 - gmx:100789144 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01247 02 30404265 30406735 Cca02g01247 02 30404265 30406735 ECH
Cca03g02808 03 49436706 49439243 Cca02g01247 02 30404265 30406735 PCT