Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02801 ATGCAACTGCTTCTGCACTCGGTTCTGAACTTTCTTGCCCCATTGCACTTCCAACTTGTTGCTGCTCAAACACACATGAAGGGGCTAGTGGCGGTGCTTTTACTTGTAGCAATAAGCACTGTTGTGGAAAGCAATGGAGAAGACAATGGTGGACCATGTAAACAGAATGCATTGAAAGTTAGGCCTCACAGTGTGTCGATCTTGGAGTTTGGGGCAGTTGGAGATGGAATAACAGTGAACACAGTTGCGTTCCAAAATGCAATATTTTATCTCAAGTCATTTGCTGACAAAGGTGGTGCTCAACTGTATGTTCCATCTGGCAGATGGCTTACTGGGAGTTTTAACCTCACCAGTCACCTCACTCTGTTCCTTGAGAGAGGCGCTACCATCATTGCATCTCAGGATTACTCTCATTGGGAAGTAGTGGATTCCCTCCCTTCATATGGTAGAGGAATTGACGTTCCAGGTGTGAGATATCGCAGCTTGATCTATGGACAAAATTTAAGAGATGTGGTAGTTACTGGTGATAATGGAACTATAGATGGGCAAGGCTCTATCTGGTGGGAGCTGTTCAGTTCTCATTCCTTAAATCACAGTCGACCAAATCTTATAGAATTTGTTGATTCTGTTGATGTCATAATTTCAAATTTGACTTTTTTAGACTCTCCTGCTTGGGACATACATCCAGTATATTGCAGTAATGTTCAAATTCAAAACATAACTTCTCGTGCACCAGCCGAATCCCCTTACACAAGTGGTATAGTTCCAGATTCTTCTCAGTATGTTTGCATTGAGAACAGTAACATTAGTACTGGCCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAGTACGGTATTTCCTATGGAAAACCAACCTCGAGTGTCCACATCAGCAATGTTTACCTACAATCATCGTCAGGTGCTGGTTTGGCACTTGGGAGTGAGATGTCTGGGGGAATACATGATATTTTTGCAGAAAAGCTTCATATACTCAATTCTCCTATTGGCATTGAGCTGAAGACAACTAGGGGTAGAGGTGGCTATATGAAAGGCATCTTAATTTCTGATGCAGAATTGGAAAATATTTGCTTAGGGATTAGCATGACAGGATTCTCCGGTTTCCATCCAGATGATGAGTATAACACAAGTGCATTTCCAGTTGTTGGTAGCATCACGTTCAAGAATGTGATTGGTGCAAATATTGGTGTTGCCGGGAATTTTTCAGGATTTGTTGAATCACCATTTTCAACAATCTGTCTTTCAAACGCGACCTTTTTTGTCAGTTCTGAAGCATCTCCTTCATGGTTCTGTTCTAATGTAGTTGGTTTCTCTGAAGAGGTGTTTCCTGAGCCATGTACTGATCTCCAGAGTTCGGATTCCAAGTTTTCTTTTTCTTGTTTTTCTTCCCTATATCCACAATTAAGTAATGTCTCAGCCTTTTTGGATCATCACCCACAAGAATTATAG 1470 0.4163 MQLLLHSVLNFLAPLHFQLVAAQTHMKGLVAVLLLVAISTVVESNGEDNGGPCKQNALKVRPHSVSILEFGAVGDGITVNTVAFQNAIFYLKSFADKGGAQLYVPSGRWLTGSFNLTSHLTLFLERGATIIASQDYSHWEVVDSLPSYGRGIDVPGVRYRSLIYGQNLRDVVVTGDNGTIDGQGSIWWELFSSHSLNHSRPNLIEFVDSVDVIISNLTFLDSPAWDIHPVYCSNVQIQNITSRAPAESPYTSGIVPDSSQYVCIENSNISTGHDAIVLKSGWDQYGISYGKPTSSVHISNVYLQSSSGAGLALGSEMSGGIHDIFAEKLHILNSPIGIELKTTRGRGGYMKGILISDAELENICLGISMTGFSGFHPDDEYNTSAFPVVGSITFKNVIGANIGVAGNFSGFVESPFSTICLSNATFFVSSEASPSWFCSNVVGFSEEVFPEPCTDLQSSDSKFSFSCFSSLYPQLSNVSAFLDHHPQEL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02801 489 PANTHER POLYGALACTURONASE-RELATED 30 473 - -
Cca03g02801 489 Gene3D - 53 446 IPR012334 -
Cca03g02801 489 Pfam Glycosyl hydrolases family 28 161 403 IPR000743 GO:0004650|GO:0005975
Cca03g02801 489 SUPERFAMILY Pectin lyase-like 53 456 IPR011050 -
Cca03g02801 489 PANTHER PECTIN LYASE-RELATED 30 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02801 Cca-Chr3 49355389 49358347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02801 26 469 Glycoside Hydrolase AT3G16850 59.775 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02801 - - gmx:100787190 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02801 03 49355389 49358347 Cca03g02801 03 49355389 49358347 ECH
Cca03g02801 03 49355389 49358347 Cca02g01253 02 30484447 30487807 PCT