Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01253 ATGAAGAGGCTAGTAACTGTGCTTTTACTTATAGTATTAAGCACTGCTCTGGAAGGCAATGGAGAGGATGATCATCAAGCATGTAAACAGAAAGCGGTGGTTCCTAGGCCTCACAGTGTGTCAATATTAGAGTTTGGGGCAGTTGGAGATGGAAAAACATTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCTGACAAAGGTGGTGCTAAATTATATGTTCCATCTGGCAAGTGGCTTACCGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAAAGAGGCGCAACCATCATTGCATCACAGGATTATGAACACTGGACTGCAGTGGATCCCCTACCTTCCTATGGTCGAGGAATTGATGTTCCTGGTAGGAGATACAGCAGTTTGATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGGAATTATTGATGGTCAGGGTTCTGTTTGGTGGGACCTATTTAAGACTCATTCCTTAAATAACAGCAGACCACACATTATAGAACTTGTTGGTTCTGATAACATCATTATCTCAAATTTGACATTTTTAAACTCTCCTGCTTGGAGCATCCATCCGGTATATTGCAGCAACGTTCAAATCCACAACATAACAGCTCATGCACCAACCGATTCCCCTTACACAAGTGGCATAGTTCCAGATTCTTCTCAGTACGTTTGCATTGAGAACAGCAATATTAACACTGGTCATGATGCGATTGCGCTGAAGAGTGGCTGGGATCAATATGGCATTGCCTATGGCAAACCAACCTCAAACGTCCACATCAGGCGTGTTTATCTACAATCATCTACTGGCGCTGGCCTAGCATTTGGAAGTGAGATGTCTGGAGGCATATCTGATATAGTTGCAGAGAAGCTCCACATTATGAACTCGACCATTGGCATTGAACTGAAGACAACTAGGGGTAGAGGTGGCTATATGAAAAACATCTTTATTTCGGATGCAAAATTGGAAAATATTTTCTTGGGTATCAGCATGACAGGATACTATGGTTCCCATCCAGATGACAAGTATGATCCTAATGCAGTTCCAGGTGTTGGTAATATTACTTTTGAGAATGTGATTGGTGCAGATATTGCTATTGCTGGGAATTTTTCAGGAATAATTGATTCCCCATTCACTCCTATCTGTCTCTCAAACGTGACTTTTTCTACCAGTTCTGAGTCATCTCCTTCATGGTTTTGTTCTAATGTAAAGGGAATCTCTGAGGAGGTGTTTCCTGAGCCATGTCCTGATCTGCAGCACACGTATTCAAACTTCCCTTCTTGCATTTCTTCCCTTCATTCGTCATCTAGTTATGTCTCAAGCGCATGA 1368 0.4189 MKRLVTVLLLIVLSTALEGNGEDDHQACKQKAVVPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAKLYVPSGKWLTGSFNLTSHLTLFLERGATIIASQDYEHWTAVDPLPSYGRGIDVPGRRYSSLIYGQNLSDVVITGDNGIIDGQGSVWWDLFKTHSLNNSRPHIIELVGSDNIIISNLTFLNSPAWSIHPVYCSNVQIHNITAHAPTDSPYTSGIVPDSSQYVCIENSNINTGHDAIALKSGWDQYGIAYGKPTSNVHIRRVYLQSSTGAGLAFGSEMSGGISDIVAEKLHIMNSTIGIELKTTRGRGGYMKNIFISDAKLENIFLGISMTGYYGSHPDDKYDPNAVPGVGNITFENVIGADIAIAGNFSGIIDSPFTPICLSNVTFSTSSESSPSWFCSNVKGISEEVFPEPCPDLQHTYSNFPSCISSLHSSSSYVSSA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01253 455 Pfam Glycosyl hydrolases family 28 136 417 IPR000743 GO:0004650|GO:0005975
Cca02g01253 455 Gene3D - 20 423 IPR012334 -
Cca02g01253 455 PANTHER PECTIN LYASE-RELATED 5 445 - -
Cca02g01253 455 SUPERFAMILY Pectin lyase-like 32 441 IPR011050 -
Cca02g01253 455 SMART pbh1 325 346 IPR006626 -
Cca02g01253 455 SMART pbh1 296 317 IPR006626 -
Cca02g01253 455 SMART pbh1 234 255 IPR006626 -
Cca02g01253 455 SMART pbh1 207 233 IPR006626 -
Cca02g01253 455 SMART pbh1 268 290 IPR006626 -
Cca02g01253 455 PANTHER POLYGALACTURONASE-RELATED 5 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01253 Cca-Chr2 30484447 30487807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01253 1 432 Glycoside Hydrolase AT3G16850 61.432 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01253 - - gmx:100801823 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01253 02 30484447 30487807 Cca02g01253 02 30484447 30487807 ECH
Cca03g02801 03 49355389 49358347 Cca02g01253 02 30484447 30487807 PCT