Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02789 ATGGAAAAACAAGCTGAATGCGCCGTCGCCAACATCCCAAACATAACAACAATAAAACCTCTTCACCATGAAAAGCGGAAGAGAGGTGCGAAGCGNNNNNNNNNNNNNNNNNNGAGCGGTGCAAAGCGGTTTCACAGGGTGGCATTCATCATAACGCGAGGGCGTTCCGCAAAACCAAAAAAGCTTCCTGTACACGATGACGGGTCCAAGGGCTTTTGGAGGAGGCTTGTGGGGTCCATGAGACCGTTGCACCTTCAAAGCACCCGATCCCCACGCGCCACCCCCGTGCAGTCCCCGTCGGCGGCGGCGGAGGAGCCCTACTCGCCGTCCCCACCGAGTAGCCGTTACGCTTCGGCGGAAGGGTTGAACGAGCTTGTCAAGAGCGAGGAGGAGAAGGAGAGCAGAGAAGAAGACGGTGATGGGGATGAGATGATTGATTCAAAGGCTGAGGAATTCATTGCTCAGTTCTACCAACAAATGAGGTTGCAGCGTTTCGATTCCATGGATCGTGATTACATCGAGCGAAGTAATAGGTCGTTGGGCTCGTGA 549 0.5264 MEKQAECAVANIPNITTIKPLHHEKRKRGAKXXXXXXXSGAKRFHRVAFIITRGRSAKPKKLPVHDDGSKGFWRRLVGSMRPLHLQSTRSPRATPVQSPSAAAEEPYSPSPPSSRYASAEGLNELVKSEEEKESREEDGDGDEMIDSKAEEFIAQFYQQMRLQRFDSMDRDYIERSNRSLGS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02789 182 PANTHER COTTON FIBER PROTEIN 1 176 - -
Cca03g02789 182 MobiDBLite consensus disorder prediction 83 104 - -
Cca03g02789 182 PANTHER COTTON FIBER PROTEIN 1 176 - -
Cca03g02789 182 Pfam Cotton fibre expressed protein 142 178 IPR008480 -
Cca03g02789 182 MobiDBLite consensus disorder prediction 83 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02789 Cca-Chr3 49264348 49265300 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02789 - - ccaj:109814724 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02789 03 49264348 49265300 Cca02g01262 02 30661403 30662635 PCT