Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02784 ATGGCTGTCACTACTCACTCTCTATCTGCCACAGAAAGGAAGTACTGGTGGCTCACCAACAGAAAGATTGTTGAGAAATACATGAAAGACGCGCGGACTCTCATAGCCACGCAAGACCAGACCGAGATCGCTTCGGCGCTCAACCTTGTGGACGCGGCTCTGGCGATTTCGCCGCGGCTGGACCAGGCGCTGGAGCTGAGAGCGAGGGCGCTGCTCTATCTGCGGCGCTACAAGGACGTCGCCGATATGCTTCAGGACTACATTCCGAGCTTCAGAATGGGCAACGATGACTCCTCCGACGCCTCCTCGCAGCAGCTCTCCAGGGAGGGAGTCAAGCTTCTCTCCTCCGACGCGCCTCAGACCTTCAAGTGCTTCTCCGTCTCCGACCTCAAGAAGAAGGTCATGGCAGGGCTGAGTAAAACTTGCGACAAGGAAGGCCAATGGAGGTACTTGTTATTGGGTGAAGCATGTTGCCACCTTGGCCTAATGGAGGATGCAATGGTTCTTCTTCAAACGGGGAAGCGTCTTGCAAGCGCCACATTCCGGCGGGAGAGTGTGTGCTGGTCAGAAGATAGCTTTTCTGTAACTAACATCTCCTTCACCGGAGACGCCACAAACGCGCTACCCACGACTCCGTCGCGGACCCTACTCGCCGACTCCGAGACCGTGGTGAACCAACTCCTCGGCCACATAAAGTTCCTCCTCCGCCGTCGCTCCGCGGCACTGGCTGCCCTCGATGCCGGGCTCTACTCGGAGGCCGTCCGCCACTTCTCGAAAATCGTGGACGGCCGCCGCAGCGCGCCACAGAGCTTCCTCGCGGAATGCTACATGAACCGTGCCTCCGCGCACCGCTCCGCCGGTAGAATCGCAGAGTCAATCGCCGATTGCAACCGCACCCTTGCCCTGGACCCCACTTGCGTTCAAGCCCTCGAAACCAGAGCCTCGCTCTTTGAAACCATTCGCTGCCTACCCGATTCTCTGCACGACCTCGAGCACTTGAAGCTCCTCTACAATGCAATCCTGCGTGACCGCAAGCTTCCCGGTCCTGCGTGGAAGCGCCACAACGTGCGCTATAGGGAGATTCCAGGGAAACTCTGCGCCCTCACCATTAAAATTCAAGAACTCAAGCAGAGGCTGGCTTCCGGTGAAATTGGGAACGTTGACTACTATGCTTTGATGGGTGTCCGACGTGGGTGTTCGCGTTCGGAGCTGGAGAGGGCTCACCTGTTGTTAACCTTGCGGCACAAGCCTGATAAGGCAACGGGTTTCATCGAAAGGTGCGAGCTTGCGGACGAGCGTGATGTTGAGTCCGTTAAGGAGAGGTCTAAGATGTCAGCATTGTTGCTGTATAGGTTGATTCAGAAGGGTTATACCAATGTGATGGGTTGCATCATGGATGAGGAAGCTGCTGAGAAGCAAAGGAAGAAAGCTGCTTTGCAAGCTATTCAAGTGCAGAAAGAGAAAGCCAATGAATCTGAGTGTAACAAGGGGGAGAGTATTCAGAGTAACAGGAGCAGCGTGGAAAATATTCAAACGTCTCAGAATAAGTCTGTGGTATTTTCTTCGACTGTGAATCCCGCCGTGTTTCAGGGTGTTTTCTGCCGTGATCTTGCGGTGGTGGGGAGCTTGCTTTCTCAGGCGGGGTTTAATCGGTCAATGCCGGTTAAGTATGAAGCGTTGAGCTGttga 1689 0.55 MAVTTHSLSATERKYWWLTNRKIVEKYMKDARTLIATQDQTEIASALNLVDAALAISPRLDQALELRARALLYLRRYKDVADMLQDYIPSFRMGNDDSSDASSQQLSREGVKLLSSDAPQTFKCFSVSDLKKKVMAGLSKTCDKEGQWRYLLLGEACCHLGLMEDAMVLLQTGKRLASATFRRESVCWSEDSFSVTNISFTGDATNALPTTPSRTLLADSETVVNQLLGHIKFLLRRRSAALAALDAGLYSEAVRHFSKIVDGRRSAPQSFLAECYMNRASAHRSAGRIAESIADCNRTLALDPTCVQALETRASLFETIRCLPDSLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTIKIQELKQRLASGEIGNVDYYALMGVRRGCSRSELERAHLLLTLRHKPDKATGFIERCELADERDVESVKERSKMSALLLYRLIQKGYTNVMGCIMDEEAAEKQRKKAALQAIQVQKEKANESECNKGESIQSNRSSVENIQTSQNKSVVFSSTVNPAVFQGVFCRDLAVVGSLLSQAGFNRSMPVKYEALSC 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02784 562 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 562 - -
Cca03g02784 562 Coils Coil 465 492 - -
Cca03g02784 562 SMART dnaj_3 387 469 IPR001623 -
Cca03g02784 562 SUPERFAMILY TPR-like 240 333 IPR011990 GO:0005515
Cca03g02784 562 SMART tpr_5 273 306 IPR019734 GO:0005515
Cca03g02784 562 CDD DnaJ 388 422 IPR001623 -
Cca03g02784 562 SUPERFAMILY Chaperone J-domain 384 422 IPR036869 -
Cca03g02784 562 Gene3D Tetratricopeptide repeat domain 9 345 IPR011990 GO:0005515
Cca03g02784 562 PANTHER - 1 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02784 Cca-Chr3 49223542 49225999 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02784 - - gmx:100808420 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02784 03 49223542 49225999 Cca03g02784 03 49223542 49225999 ECH
Cca03g02784 03 49223542 49225999 Cca02g01272 02 30829547 30831820 PCT