Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01272 ATGGCCGTCACCACTCCCTCTCCCTGTCCGAATGCCACAGAAAAGAAACACTGGTGGCTCACCAACCGAAAGATCGTTGAGAAATACATGAAAGACGCTCGGAGTCTGATAGCGACTCAGGAACAGAGCGAGATCGCTTCGGCGCTGAACCTTCTAGACGCGGCTCTCGCGATCTATCCACGCCTAGACCAAGCGCTTGAGCTCAGAGCCAGGTctctgctctttcttcgcaggttcaaagacCAGCTTCTAACCTCCTCCGACTCCTCCCATTCGGATCAGAGCTTCAAGTGCTTCTCTGTCTCTGACTTGAAGAAGAAGCTTATGGCAGGGTTCTGTAAAAGTTGCGACAACCAAGGCTATTGGAGATACTTGGTGCTGGGGAAAGCATGTTGCCACCTAGGCCTAATGGAAGACGCAATGGTCCTTCTCCAAACGGGAAAACGCCTCGCCACGGCGGCCTTCCGCCGCGAGAGCGTGCATTGGTCCGACGACAGCTTCTCCCTCTCCAACCCCCTCTTCGCCGGCGACACCGCGCCCGCCGCCACCCCACCACCGGAGTCCGAAACCGTGACCCAGCTCCTGGCCCACATAAAGCTCCTCCTCCGGCGCCGCGCCGCCGCGCTGGCCGCCCTGGACGCGGGGCTCCACTCGGAGGCCATCCGCCACTTCTCGAAAATCGTTGAAGGCCGGCGCGGCGCCCCGCAGGGCTTCCTGGCGGAGTGCTACATGCACAGAGCCGCCGCGCACCGGTCGGCGGGCCGAATCGCGGACTCAATCGCGGACTGCAACAGAACCCTGGCCTTGGACCCAACCTGCATCCAAGCACTTGACACCAGAGCCTCTCTTCTGGAATCCATTCGGTGCTTCCCGGACTCGCTCCACGACCTGGAGCACCTGAAGCTCCTCTACAACACCATCCTCCGCGACCGAAAGCTGGCGGGTCCAGCGTGGAAGCGCCACAACGTGCGGTACGGCGAGATTCCCGGGAAGCTCTGCGTTCTGGCGACGAAGATCCAGGAGCTGAAGCAGAGAGTGGCTTCGGGGGAGACGGGGAACGTGGACTACCACGGGCTGATCGGGTTGCGGCGCGGGTGCGGCCGTTCGGAGCTGCAGAGGGCGCACTTGTTGCTGTGTCTGAAACACAAGCCCGACAAGGCCACCTGCTTCATCGAAAGGTGCGAGCTGGGCGACGACCGCGACCTCGATTCGGTTAAGGAAAGGGCGAGGATGTCCGCGCTGCTGCTCTACCGGCTGCTTCAGAAGGGCTACACCCATGTGATGGGTAGCATCATGGACGAGGAGGCCGCTGAGAAGCAGAGGAAGAGGCTTCTCGaagcccaggcccaggcccaagcccaagcccaagccGTGAATGAGACTAACGTGAAGGCGGAGAAAACGAAGTGCACCGTTTCGTCTCCTTCCACCGCGAACCCGACGGTTTTTCAGGGAGTGTTCTGCCGGGATCTTGCTGCTGTTGGGAACTTGCTTTCACAAACGGGATTCAACCGTTCCATTCCCGTCAAGTTCGAGGCGTTGACCTGTTGA 1551 0.5796 MAVTTPSPCPNATEKKHWWLTNRKIVEKYMKDARSLIATQEQSEIASALNLLDAALAIYPRLDQALELRARSLLFLRRFKDQLLTSSDSSHSDQSFKCFSVSDLKKKLMAGFCKSCDNQGYWRYLVLGKACCHLGLMEDAMVLLQTGKRLATAAFRRESVHWSDDSFSLSNPLFAGDTAPAATPPPESETVTQLLAHIKLLLRRRAAALAALDAGLHSEAIRHFSKIVEGRRGAPQGFLAECYMHRAAAHRSAGRIADSIADCNRTLALDPTCIQALDTRASLLESIRCFPDSLHDLEHLKLLYNTILRDRKLAGPAWKRHNVRYGEIPGKLCVLATKIQELKQRVASGETGNVDYHGLIGLRRGCGRSELQRAHLLLCLKHKPDKATCFIERCELGDDRDLDSVKERARMSALLLYRLLQKGYTHVMGSIMDEEAAEKQRKRLLEAQAQAQAQAQAVNETNVKAEKTKCTVSSPSTANPTVFQGVFCRDLAAVGNLLSQTGFNRSIPVKFEALTC 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01272 516 PANTHER - 7 81 - -
Cca02g01272 516 SMART tpr_5 240 273 IPR019734 GO:0005515
Cca02g01272 516 CDD DnaJ 355 388 IPR001623 -
Cca02g01272 516 PANTHER - 83 516 - -
Cca02g01272 516 Gene3D Tetratricopeptide repeat domain 174 316 IPR011990 GO:0005515
Cca02g01272 516 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 7 81 - -
Cca02g01272 516 SUPERFAMILY TPR-like 206 301 IPR011990 GO:0005515
Cca02g01272 516 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 83 516 - -
Cca02g01272 516 Coils Coil 434 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01272 Cca-Chr2 30829547 30831820 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01272 - - gmx:100780225 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01272 02 30829547 30831820 Cca02g01272 02 30829547 30831820 ECH
Cca03g02784 03 49223542 49225999 Cca02g01272 02 30829547 30831820 PCT