Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02776 ATGGACGATGACGAGACACCGTTGGACGACAAATCAAAGAGAATGAGAGATCTGCTAGCTAGTTTCTACTCTCCCATCCCTTCAGCCTCCTCCAACCCCTTCTCCAAGCACACCTCTCCCGACGACATCAATTCTGCATCGTTCCAACCTGATCAGTACATGAATATCATGGCGCGTAAGTCGAATTTAGAAGGTCTACTCCAGAGGCACGTTGAAATGGTTGCTGAAATAAAGAATCTGGACACTGACTTGCAAATGCTCGTCTACGAGAATTACAACAAGTTTATTTGCGCTACAGATACTATAAAGAGAATGAAGAGTAATATTTTGGGGATGGAGGAAAATATGGAACATCTTCTTGAAAAGATAATGTCTGTACAATCAAGGAGTGACAGTGTTAATACTTCTCTATGCGAAAATAGGGAGCATATAGAGAAAATGCATCGGACATGCAATCTACTTCGTAAAATTCAGTTCATATATGATCTACCTGATAGACTAGGCAAGTGCATCAAATCTGAGGCTTATGCGGATGCAGTCAGGTTCTACATCGGTGCAATGCCAATTTTTAAGGCATATGGAGATTCATCATTCCAGGATTGTAAGCGAGCATCTGAAGAAGCAATAGCTATCATAGTAAAAAACTTGCAGGGAAAACTATTTTCAGATTCTGAATCATTGCAAGTGAGAGCCGAGGCTGCAGTGCTCTTGAAGCAGTTGAATTTTCCTGTGGAAAATTTAAAGACAAAGCTACTAGAGAAGTTAGAGTTTACCCTTAAAGACATTCAGTTTATTCCTGAAGCAATGGAGAATGCTTCTCCCCCAACTCATGAGGTAGCCATTCACGAGTTTGTGGAAGCCATTCGTGCATTTAAAGTAATCTTTCCAGATTCAGAAAAGCAATTAGTTAAACTTGCTCAAGACTTGGTAACCAAACAATTTCTACTTATAGAGGACTACGTAAAGACACGGATTTGTGCAACAGATTTACTTGGTGTGCTTCGTGTTATCTGGAATGATGTGCTCCAAATGGATGAAGTCTTGGAAGAAGCATCTATCTCTAATCTTTCTCTTGAGGCTGCCAAGGTTGCTATCAAGCTGTATATTAGAAGTGCATTTTCTCATCTAATCCAAGACATCTCAGATCACCTCTTAAAAGTACTAAAACGGGATGGAGAAGAGGAGGCCTCACTGGAAGTTGCCCTAGATGCTAGCATAAAAGTGGTTTTCCACGGAGCCAGGAATTTTTTATTGGATATCCACAAAATTCTAGATGACAACTTAGAGATTGTTGATAAACTAAGAGAGTTAATAATTGATTGGGTTCAACAAGGATACCAAGACTTTTTTAGTGAACTTGAGGTTCAATTCATATTGTTTTCGAAAAGAAACAATTTTACTCAAATTCATGGTTTGTCAGAGGGATCTCAAGCTGACAAAACCTTTCATAGCCTTGTTCTAGTGTTGGCCCAACTTTCTGCTTTTATTGGACAAACTGCCATCCCAAAAATCACTGAGGAATTATCAGCTTCCTTTTCTGGTGGAAGTGTTAGAGGTTATGAATATGGTCTGACCTTTGCTCCTGGAGAGATCTCTCAAAAGTTTAGGGTAACTGGTGAAAAATTGTTGCAGCTGTACATAAATATGAGAACCCAGCGAATATCACTTCTCGTAAAGAAGAGGTTTGCCACACCTAATTGGGTTAAGCACAAGGAGCCAAGAGAAGTTCATATGTTTGTTGATTTATTTCTTCAAGAGCTAAAAATTACAGATACTGAAGTGAAGCAAATTTTACCTCAAGATTTGCAAAAGCACCGCAGGGCTGATAGTAATGGAAGTACTAATTCATCAAGAAGTACTTCTTTTCGGGAAGAGAAGTTGAGTCGCTCAAATATTCAGAAGGGAAGGAGCCAACAACTTTTGGAAACACACCTTGCAAAACTGTTTAAGCAAAAAGTTGAAATTTTCACAAAAGTGGAAAATACACAGGAATCAGTTATTATGGCCATTGTTAAATTGTGCCTTAAAAGTTTACAAGAATTTGTTCGACTTCATACTTTAAACCGGAGTGGATTCCAACAAATTCAATTGGATATTCAGTTCTTGAGGAATCCATTAAAAGAAATAGCTGAAGATGAAGCTGTCACGGACTTCTTGCTTGATGAGGTGATTGTTGCTGCTGTAGAACGATGTCTTGATCCAATTCCACTGGAGCCCCCTATATTGGACAAACTTATACATGCAAAGATGGCAAAACATAAGGAACAATATGCAATCTCTTCATAA 2286 0.3885 MDDDETPLDDKSKRMRDLLASFYSPIPSASSNPFSKHTSPDDINSASFQPDQYMNIMARKSNLEGLLQRHVEMVAEIKNLDTDLQMLVYENYNKFICATDTIKRMKSNILGMEENMEHLLEKIMSVQSRSDSVNTSLCENREHIEKMHRTCNLLRKIQFIYDLPDRLGKCIKSEAYADAVRFYIGAMPIFKAYGDSSFQDCKRASEEAIAIIVKNLQGKLFSDSESLQVRAEAAVLLKQLNFPVENLKTKLLEKLEFTLKDIQFIPEAMENASPPTHEVAIHEFVEAIRAFKVIFPDSEKQLVKLAQDLVTKQFLLIEDYVKTRICATDLLGVLRVIWNDVLQMDEVLEEASISNLSLEAAKVAIKLYIRSAFSHLIQDISDHLLKVLKRDGEEEASLEVALDASIKVVFHGARNFLLDIHKILDDNLEIVDKLRELIIDWVQQGYQDFFSELEVQFILFSKRNNFTQIHGLSEGSQADKTFHSLVLVLAQLSAFIGQTAIPKITEELSASFSGGSVRGYEYGLTFAPGEISQKFRVTGEKLLQLYINMRTQRISLLVKKRFATPNWVKHKEPREVHMFVDLFLQELKITDTEVKQILPQDLQKHRRADSNGSTNSSRSTSFREEKLSRSNIQKGRSQQLLETHLAKLFKQKVEIFTKVENTQESVIMAIVKLCLKSLQEFVRLHTLNRSGFQQIQLDIQFLRNPLKEIAEDEAVTDFLLDEVIVAAVERCLDPIPLEPPILDKLIHAKMAKHKEQYAISS 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02776 761 MobiDBLite consensus disorder prediction 601 634 - -
Cca03g02776 761 Pfam Vps51/Vps67 43 128 - -
Cca03g02776 761 PANTHER UNCHARACTERIZED 1 722 IPR014812 -
Cca03g02776 761 MobiDBLite consensus disorder prediction 24 43 - -
Cca03g02776 761 Coils Coil 102 122 - -
Cca03g02776 761 PANTHER LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG 1 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02776 Cca-Chr3 49136655 49145795 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02776 K20296 - gmx:100818891 1076.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02776 03 49136655 49145795 Cca03g02776 03 49136655 49145795 ECH
Cca03g02776 03 49136655 49145795 Cca02g01280 02 30927759 30935400 PCT