Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01280 ATGGCGGTAGACGAAGTACCAATTGACGACAAGGCAAAGAGGATGCGAGATCTGCTATCGAGTTTCTACTCCCCAGACCCTTCCATCTCCAACACCTCTTCCAAACACGCTTCCCTCGACGACATCAATTCCACCTCCTTCGATCCCGATCAGTACATGAATATCCTGGCACACAAGTCCAATTTGGAAGGGCTGCTCCAACGCCACGTCGAAATGGCAGCTGAAATCAAGAATCTCGACACGGACTTGCAAATGCTAGTTTACGAGAATTACAACAAGTTCATCAGCGCTACAGACACTATAAAGAGGATGAAAAGTAACATTTCAGGAATGGAGGCAAATATGGAGCAGCTTCTTGAGAAGATAATATCTGTGCAGTCCCGAAGTGACAGTGTCAACACTTCTCTGTTTGACAAAAGGGAGCATATTGAGAAACTGCACCGGACTTGTAATCTTCTTCGGAAAGTTCAGTTCATATATGATCTACCTGACAGACTAGCCAAGTGCATCAAGTCAGAGTCCTATGCAGATGCAGTCAGATTTTACACCGGAGCAACGCCAATTTTTAAGGCGTATGGAGATTCATCATTCCAGGATTGTAAGCAGGCATCTGAAGAAGCAATAGCTATCATAGTAAAAAACTTGCAGGGGAAGCTATTTTCAGATTCTGAATCAATACAAGTGAGAGCTGATGCAGCAGTGCTTCTTAAGCAGTTGAATTTTCCGGTGAACAATTTGAAGGCAAAGTTGTTTGAAAAGTTAGAACAATCCATTACAGACATTCAGTTGAACCCTGGAGAAATAAATAAAGCTTCAGGGGACCATTCTGCTCATGAGACTGCTATTCATGAATTTGTGGAGGCAGTTCGTGCTTTTCGAGTAATATTTCCTGATTCAGAAGAACAGTTGGTTAAACTTGCTCAAGATTTGATTACCAAGAACTTTTTAATTAGTGAAGAGTATGTGAAGACACGGATTTGCCCAGAAGATCTACTTGGCATTCTTCGAGTTATTTGGAATGATGTGCTCCTGATAGATGAAGTCTTACAGGAAGCAGCTCTTTCTAACCATTCACTTGAGGATGCGAAGGTTGTTGTCACATCATATATTAGAAGTGCATTTTCTCATCTTCTGCAAGACATTTCAGATTCCCTCTTACAAATCCTGAAAAAGGATGGAGCAGAACAGTGCTCTCTCGACGTTGTTCTTGATGCTAGCACAAAAGCAGTTCTCCAAGGTGGCTTGAATGTCTTGCTGGACTTCCACAAAATTTTAGATGATGACTCTGGGGTCCTAGTTAGACTGAGAGAGTTAATCATTGATTGGGTTCAAGAAGGACTTCAAGACTTTTTTAGGCAACTTGAGGATCAGTTCCTTGTGCTTTCGGGAAGAAATAATTCATCTAGTCAAGTACATGGTTTAGTGGAGGGAGCTCAAGGTGACAAAGCTTTTGCTGGCCTTGTCCTTGTGCTGGCACAATTGTCTGCTTTTATTGAACAAACTGTCATCCCAAAAGTTACTGAGGAAATAGCTGCTTCCTTTTCTGGTGGTAGTGTTAGAGGCTATGAATCTGGACCTGCCTTTGTTCCTGGAGAAATATGTCGAAAATTTCGATCAGCTGGTGAAAAATTCCTGCACCTGTACATCAATATGAGAACTCAGAGGGTATCACTCCTCCTGAAGAAGAGGTTTACCACCCCTAATTGGGTTAAGCATAAGGAGCCAAGAGAAGTTCATATGTTTGTAGATTTATTTCTTCAAGAGCTTGAAGTCATAGTTAATGAAGTGAAGCAGATTTTGCCTCAAGGTAGACGTAAGCACCACAGGACTGATAGTAATGGAAGTACTGCTTCATCAAGGAGTAACCCCTTACGGGAGGAGAAACTGGGTAGGTCAAATACTCAAAGAGCAAGGAGCCAGCTTTTGGAAACGCATCTAGCAAAATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAGTATACACAGGTATTGAGTGATTACTTTATTGGTGATTAA 2022 0.4159 MAVDEVPIDDKAKRMRDLLSSFYSPDPSISNTSSKHASLDDINSTSFDPDQYMNILAHKSNLEGLLQRHVEMAAEIKNLDTDLQMLVYENYNKFISATDTIKRMKSNISGMEANMEQLLEKIISVQSRSDSVNTSLFDKREHIEKLHRTCNLLRKVQFIYDLPDRLAKCIKSESYADAVRFYTGATPIFKAYGDSSFQDCKQASEEAIAIIVKNLQGKLFSDSESIQVRADAAVLLKQLNFPVNNLKAKLFEKLEQSITDIQLNPGEINKASGDHSAHETAIHEFVEAVRAFRVIFPDSEEQLVKLAQDLITKNFLISEEYVKTRICPEDLLGILRVIWNDVLLIDEVLQEAALSNHSLEDAKVVVTSYIRSAFSHLLQDISDSLLQILKKDGAEQCSLDVVLDASTKAVLQGGLNVLLDFHKILDDDSGVLVRLRELIIDWVQEGLQDFFRQLEDQFLVLSGRNNSSSQVHGLVEGAQGDKAFAGLVLVLAQLSAFIEQTVIPKVTEEIAASFSGGSVRGYESGPAFVPGEICRKFRSAGEKFLHLYINMRTQRVSLLLKKRFTTPNWVKHKEPREVHMFVDLFLQELEVIVNEVKQILPQGRRKHHRTDSNGSTASSRSNPLREEKLGRSNTQRARSQLLETHLAKLFKQKVEIFTKVEYTQVLSDYFIGD 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01280 673 PANTHER LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG 1 664 - -
Cca02g01280 673 Coils Coil 101 128 - -
Cca02g01280 673 MobiDBLite consensus disorder prediction 602 636 - -
Cca02g01280 673 PANTHER UNCHARACTERIZED 1 664 IPR014812 -
Cca02g01280 673 Pfam Vps51/Vps67 42 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01280 Cca-Chr2 30927759 30935400 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01280 K20296 - gmx:100818891 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01280 02 30927759 30935400 Cca02g01280 02 30927759 30935400 ECH
Cca03g02776 03 49136655 49145795 Cca02g01280 02 30927759 30935400 PCT