Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02770 ATGGCAACTACGACTGGTGTTAGTCTTTCAAGCCCCAGGGTTTTGTTTAAGGCATCGGTCTCGCCGCAAAGCGCGCATGCCATAAAGTTCTTCGCAGTTCCACTGGGTCAAGGGATGCAGCCTGTTATTATCCGGTCGGGTCGGGTCTCCACGATCCAACCCATTCGCGCTGTGCCGGAGAAGATATCGGAGAAGGTGGAGGAGCTGAGCGCGGCGGCCAGCCACGCCAGGGACAAGCAAAAGGAGAAGGACTCCGACCCGCTTGAGAACTACTGCAAGGACAACCCGGAAACCATTGAGTGCAAAACCTTCGACGAgcgtacttcttcaaataggattgtttcaagggaaagcacgatcatgcatcttagtactcatgggcgtggatgtcagcatgggtttgcatcttcaagattggaacatgcttcatcttag 435 0.4092 MATTTGVSLSSPRVLFKASVSPQSAHAIKFFAVPLGQGMQPVIIRSGRVSTIQPIRAVPEKISEKVEELSAAASHARDKQKEKDSDPLENYCKDNPETIECKTFDERTSSNRIVSRESTIMHLSTHGRGCQHGFASSRLEHASS 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02770 144 Pfam CP12 domain 63 105 - -
Cca03g02770 144 PANTHER CALVIN CYCLE PROTEIN CP12-1 66 106 - -
Cca03g02770 144 SMART CP12_2 52 106 IPR003823 -
Cca03g02770 144 MobiDBLite consensus disorder prediction 66 94 - -
Cca03g02770 144 PANTHER CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC 1 68 IPR039314 -
Cca03g02770 144 PANTHER CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC 66 106 IPR039314 -
Cca03g02770 144 PANTHER CALVIN CYCLE PROTEIN CP12-1 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02770 Cca-Chr3 49080656 49082325 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02770 - - ccaj:109814754 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02770 03 49080656 49082325 Cca02g01282 02 30956686 30957917 PCT