Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02716 ATGAGGAGACCTTCAACACTTGTGGAAGTGCTTTTGGTACTTGCATTGTTCAGTGGTAGTCCATGGATAGTGTGGAGCAACACTCTTTGCCAACAGACAAACCTGGAGGAAGTTCGACCTCACAGTGTCAGCATCACGGAATTTGGGGCAGTTGGCGATGGGGTCACTCTCAACACAAAAGCATTTCAGAATGCCATCTTCTACCTAAATTCGTTTGCAGACAAAGGTGGAGCCAAGCTTTTTGTCCCGGCCGGCCGGTGGTTAACTGGTAGTTTTGATCTCATCAGTCATCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACTTTGAAGATTGGCCAGTTGTTGATCCTCTACCGTCATATGGGAGAGGAAGAGAGTTGCCGGGTGGAAGGCATAGGAGCCTCATTTATGGGCGCAATTTGACTGATGTTATAATAACAGGTAATAATGGAATTATTGATGGTCAAGGGAGTATCTGGTGGAGCAGGTTTAGGAACAAAACACTGGATTATACACGTCCCCATTTGGTAGAATTGATGAATTCAACAGGGGTTCTCATTTCAAATTTAACCTTCTTGAACTCTCCATTTTGGACAATTCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAATGTTGCGATCGTTGCTCCTCTTGATTCACCAAACACAGATGGGATTGATCCAGATTCTTCTGACAATGTATGCATTGAAGACTGTTACATAAGCACTGGTGATGATCTGATAGCCATCAAGAGTGGGTGGGATGAGTATGGCATCGCATATGGTCGCCCCAGCACAAACATTATCATCCACAGGCTCGTTGGTAGATCTCAAACGAGTGCAGGGATTGCAATAGGAAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATGCAGAGGATATTCATTTCTATGATACATATTCTGCAATAAGAATAAAGACTTCTCCTGGAAGGGGTGGTTATGTTAGAAACATCTATGTCTCTAACATGACCTTGGCTAATGTAGACATTGCTATTAGGTTCACTGGTTTATATGGGGATCATCCAGATGATGCTTATGACCCAAATGCTCTACCTGTAATAGAAAAGATTACAATCAAGGATGTGGTAGGAGAAAAAATAAAAACTGCAGGTCTTATAGAGGGTATAAAAGGTGACAATTTTGTCAACATTTGCCTATCAAACATCACCCTTAATGTGTCTTCAAACTATCCATGGAACTGCTCCTACATTAAAGGATACTCAGACTTGGTTCTGCCAGAAGCTTGTGAGCCTCTGAAGGAGAGAATATTCCCTGAGCATTGTTCAGATTGTTACAATTTGTCAAATCACCTACAGAGTTCCAATAGTCAACATAGAGCAGGACGAACTTCAGGCGACATAAGAAGTTGA 1410 0.4227 MRRPSTLVEVLLVLALFSGSPWIVWSNTLCQQTNLEEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNFEDWPVVDPLPSYGRGRELPGGRHRSLIYGRNLTDVIITGNNGIIDGQGSIWWSRFRNKTLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTVQNVAIVAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPSTNIIIHRLVGRSQTSAGIAIGSEMSGGVSEVHAEDIHFYDTYSAIRIKTSPGRGGYVRNIYVSNMTLANVDIAIRFTGLYGDHPDDAYDPNALPVIEKITIKDVVGEKIKTAGLIEGIKGDNFVNICLSNITLNVSSNYPWNCSYIKGYSDLVLPEACEPLKERIFPEHCSDCYNLSNHLQSSNSQHRAGRTSGDIRS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02716 469 Gene3D - 24 419 IPR012334 -
Cca03g02716 469 PANTHER OS07G0245200 PROTEIN 7 452 - -
Cca03g02716 469 PANTHER PECTIN LYASE-RELATED 7 452 - -
Cca03g02716 469 SUPERFAMILY Pectin lyase-like 37 432 IPR011050 -
Cca03g02716 469 Pfam Glycosyl hydrolases family 28 82 418 IPR000743 GO:0004650|GO:0005975
Cca03g02716 469 SMART pbh1 328 349 IPR006626 -
Cca03g02716 469 SMART pbh1 210 236 IPR006626 -
Cca03g02716 469 SMART pbh1 237 269 IPR006626 -
Cca03g02716 469 SMART pbh1 299 320 IPR006626 -
Cca03g02716 469 SMART pbh1 271 293 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02716 Cca-Chr3 48512042 48516023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02716 1 460 Glycoside Hydrolase AT3G62110 68.240 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02716 - - gmx:100782602 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02716 03 48512042 48516023 Cca02g01337 02 31779937 31785547 PCT