Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01337 ATGAAGAGACTTTCAACTTTAGTGGATGTGTTTCTGGTTCTTGCATTGTTCAGTTGTAGCACATGGACAGTGTGGAGCAGCTCGTGCTGCAATCAGATAAACTTGAAGGAAATCCGACCTCACAGCGTCAGTATTACTGAATTTGGAGCTGTTGGTGATGGGATCACTCTCAATACAAAAGCATTTCAAAATGCCATTTTCTACCTAAATTCATTTGCGGACAAAGGTGGAGCCAAACTTTTTGTCCCAGCTGGCCAGTGGTTAACTGGAAGCTTTGATCTCATCAGCCATCTAACTTTGTGGTTGGACAAAGATGCAGTAATTCTTGGATCAACGAACTCTGACGACTGGCCAGTTGTGGATCCTCTACCATCATACGGTCGTGGAAGGGAGTTGCCGGGTGGAAGGCATAAAAGCCTCATTTATGGGCGCAATTTGACTGATGTTGTCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTGTCTGGTGGAACAAGTTTTGGAACAAAACACTAGACTACACACGTCCTCATTTGGTTGAGTTGATGAATTCAACTGGGGTTCTCATTTCAAATATTACTTTCTTGAATTCACCATTTTGGACTATTCACCCTGTATATTGCAGCAATGTTATAATTCGGAATGTCACAATCCTTGCTCCTCAAAGCTCACCAAATACAGATGGCATTGATCCAGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATCAAAAGCGGATGGGATGGATATGGGATTTCCTTTGGTCGACCCAGTACAAATATTAACATCCGCAGACTGATTGGGAAAACAACGAGTGCAGGGATTGCTATTGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTTCATGCAGAAGATATTTACGTTTTTGACTCACGAAGTGCCATTAGAATAAAAACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATATCTCTAACATGATCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCAGATGACACTTGTGACCCAAATGCTTTACCGGTAATAGAAAAAATTACTATCAAGGATGTCACAGGGGAAAAAGTCAAACGTGCTGGCCTTATAGAGGGTATTAAAGGGGACAACTTTGTCAATATCTGCCTATCAAACATCACCCTGAATGTGAGATCAAAAATTCCATGGAACTGCTCTTACGTTAAAGGATACTCTGACTTGGTTTCACCTGAAGCTTGTGAGCCTCTCAAAGAGAGAATATTCCCTGAGCATATTTCAGATTGTTACTATATACCAAACCACTTAAAGAATTTGAGTAATCAAAATTCGGGTGCTTGGTTACTGTCATGGTAA 1398 0.4077 MKRLSTLVDVFLVLALFSCSTWTVWSSSCCNQINLKEIRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHKSLIYGRNLTDVVITGNNGTIDGQGSVWWNKFWNKTLDYTRPHLVELMNSTGVLISNITFLNSPFWTIHPVYCSNVIIRNVTILAPQSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYVFDSRSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDTCDPNALPVIEKITIKDVTGEKVKRAGLIEGIKGDNFVNICLSNITLNVRSKIPWNCSYVKGYSDLVSPEACEPLKERIFPEHISDCYYIPNHLKNLSNQNSGAWLLSW 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01337 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Cca02g01337 465 SUPERFAMILY Pectin lyase-like 37 430 IPR011050 -
Cca02g01337 465 Gene3D - 22 418 IPR012334 -
Cca02g01337 465 Pfam Glycosyl hydrolases family 28 137 417 IPR000743 GO:0004650|GO:0005975
Cca02g01337 465 SMART pbh1 237 269 IPR006626 -
Cca02g01337 465 SMART pbh1 271 292 IPR006626 -
Cca02g01337 465 SMART pbh1 298 319 IPR006626 -
Cca02g01337 465 SMART pbh1 210 236 IPR006626 -
Cca02g01337 465 SMART pbh1 327 348 IPR006626 -
Cca02g01337 465 PANTHER OS07G0245200 PROTEIN 7 448 - -
Cca02g01337 465 PANTHER PECTIN LYASE-RELATED 7 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01337 Cca-Chr2 31779937 31785547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01337 1 465 Glycoside Hydrolase AT3G62110 68.922 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01337 - - gmx:100786985 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02716 03 48512042 48516023 Cca02g01337 02 31779937 31785547 PCT