Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02714 ATGAGATCCTTTTCCTTCCTCTTCACCTTATTCATTTCCTCCATTGCTCTTGTATCCTCTGCAGCTTTTGGAGGTCAAGCATGGACACCCGTCTCTTCTCTCATCACAAAAACTCTTTTCGACACCTTTTTCCTACACAAAGATGACACTGCATGCCCTGCCAAAGATTTCTACACGTACGACTCCTTCATTCGTGCATCCAAATTGTTCCCGGCATTTGGCAGCACCGGTTGTTTAGCCACACGCAAGCGTGAGATTGCTGCATTTCTGGCTCAAATTTCCCACGAAACCACGGGTGGCTGGGCCACTGCACCTGACGGCCCATTTGCTTGGGGCTTGTGCTTCAAGGAAGAAATTAATCCTCAGAGTAATTACTGTGATTCCACTAACACCCAATGGCCTTGCTTCCCTGGCAAAACTTACAAGGGACGAGGACCCATTCAACTTTCTTGGAACTATAACTATGGTCCAGCAGGGAAGGCGTTGGGATTCGATGGGCTCAAGAACCCTGAGATTGTGGCCAACAATTCTGTGATTGCTTTCAAAACTGCTTTGTGGTTTTGGATGACAGAGCAAAAGCCAAAACCTTCTTGCCACGAAGTGATGGTTGGAACATATGAGCCAACAGAAGCTGACATAGCAGCGAACCGAACACTTGGTTATGGCTTAGTGACTAACATAATCAATGGTGGACTTGAATGTGGTATTCCTGATGATGCACGAGTGAATGATCGGATTGGGTTTTTTCAAAGATATACAAAGTTATTGAACGTGGACACTGGACCTGACTTGGATTGTGCAAATCAGAAACCCTTCTAA 819 0.4579 MRSFSFLFTLFISSIALVSSAAFGGQAWTPVSSLITKTLFDTFFLHKDDTACPAKDFYTYDSFIRASKLFPAFGSTGCLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEINPQSNYCDSTNTQWPCFPGKTYKGRGPIQLSWNYNYGPAGKALGFDGLKNPEIVANNSVIAFKTALWFWMTEQKPKPSCHEVMVGTYEPTEADIAANRTLGYGLVTNIINGGLECGIPDDARVNDRIGFFQRYTKLLNVDTGPDLDCANQKPF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02714 272 Gene3D Endochitinase, domain 2 117 175 - -
Cca03g02714 272 SUPERFAMILY Lysozyme-like 31 272 IPR023346 -
Cca03g02714 272 ProSitePatterns Chitinases family 19 signature 2. 179 189 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca03g02714 272 CDD chitinase_GH19 35 266 - -
Cca03g02714 272 Gene3D - 38 272 - -
Cca03g02714 272 PANTHER OS05G0138200 PROTEIN 20 272 - -
Cca03g02714 272 Pfam Chitinase class I 34 266 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca03g02714 272 PANTHER CHITINASE-RELATED 20 272 - -
Cca03g02714 272 PIRSF Endochitinase 13 272 IPR016283 GO:0004568|GO:0005975
Cca03g02714 272 ProSitePatterns Chitinases family 19 signature 1. 52 74 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02714 Cca-Chr3 48479900 48480810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02714 2 272 Glycoside Hydrolase AT1G02360 69.004 7.10e-147 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02714 - - gmx:100784196 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02714 03 48479900 48480810 Cca02g01340 02 31822964 31825070 PCT