Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01340 ATGGCATTCTCATTCTTGTCTAGCTTGCTATTCGTCTTCGCTATTCTTCTTCACTCCACGTCTTTGGTTACTGAAGCTCGTAGCTCAGTGCCCCCCACACCCATCTCTCATCTCGTTAGCGAAGAGCTTTTTGATTCCATTTTCCTGCACAAAGATGACTCTGCATGCCCCGCCAAAAACTTCTACACCTACGAGTCCTTCATCACGGCGTCGAAACGCTTCCCGGGGTTTGGTAGCAGTGGTAGTTTAAGCACTCGGAAGCGTGAGATTGCTGCATTTCTTGCTCAAATTTCGCATGAAACTACAGGTGGGTGGGCTACTGCACCTGATGGACCCTATGCTTGGGGATTGTGTTTCAAGGAAGAAGTTAGTCCTCAAAGTGACTACTGTGATTCCTCCAACAAAGAATGGCCTTGTTATCCAGGGAAAACTTACAAAGGCAGAGGTCCAATTCAACTTTCATGGAACTACAACTATGGGCCAGCAGGGAAGGCCTTGGGATTTGATGGATTAAGAAACCCGGATGTGGTGTCAAACAATTCATTGATTGCATTCAAAACAGCTCTCTGGTTTTGGATGACAGAGCAAAAGCCAAAACCCTCTTGCCACAATGTGATGATTGGAAAATATGTGCCAACACAAGCTGACATAGCAGCTAATCGAACTGCGGGGTATGGCCTAGTCACAAACATAATCAATGGTGGACTTGAATGTGGAATTCCTAATGATTCAAGGGTGAATGACCGGATTGGATACTTTAAAAGATATGCTACCTTGTTTAACGTAGATACAGGTTCTAACTTGGATTGTGCATATCAGAATTCCTTCTAA 831 0.4465 MAFSFLSSLLFVFAILLHSTSLVTEARSSVPPTPISHLVSEELFDSIFLHKDDSACPAKNFYTYESFITASKRFPGFGSSGSLSTRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEVSPQSDYCDSSNKEWPCYPGKTYKGRGPIQLSWNYNYGPAGKALGFDGLRNPDVVSNNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTQADIAANRTAGYGLVTNIINGGLECGIPNDSRVNDRIGYFKRYATLFNVDTGSNLDCAYQNSF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01340 276 PANTHER CHITINASE-RELATED 7 276 - -
Cca02g01340 276 CDD chitinase_GH19 39 270 - -
Cca02g01340 276 ProSitePatterns Chitinases family 19 signature 1. 56 78 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca02g01340 276 Gene3D Endochitinase, domain 2 121 179 - -
Cca02g01340 276 PIRSF Endochitinase 13 276 IPR016283 GO:0004568|GO:0005975
Cca02g01340 276 Gene3D - 42 276 - -
Cca02g01340 276 ProSitePatterns Chitinases family 19 signature 2. 183 193 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca02g01340 276 Pfam Chitinase class I 38 270 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca02g01340 276 SUPERFAMILY Lysozyme-like 35 276 IPR023346 -
Cca02g01340 276 PANTHER OS05G0138200 PROTEIN 7 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01340 Cca-Chr2 31822964 31825070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01340 11 276 Glycoside Hydrolase AT4G01700 72.119 5.55e-148 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01340 - - gmx:100785397 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02714 03 48479900 48480810 Cca02g01340 02 31822964 31825070 PCT