Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02692 ATGAAGCTGTTTCTGTTGACTCTTCCTTTGGTGTTGTTAATGTTAACCACCGCCACAGCATCAGATCCTGATCCTCTTCAAGACCTCTGTGTTGCAGACCCTGCCTCAGCTGTTAAAGTGAATGGATTCACCTGCAAAGATGCTTCCAAGGTGAATGCAAGTGATTTCTTCTCAGCCATATTAGCAAAACCTGGTGCCACAAACAACACCTATGGTTCCATAGTGACTGGAGCCAACGTTGAGAAAATCCCAGGATTGAACACCCTTGGTGTGTCTTTGTCACGCATTGACTATGCCCCAGGTGGCCTAAACCCACCTCACACGCACCCACGTGCCACAGAGATTGTGTTCGTGCTTGAAGGCACACTCGATGTGGGGTTCATCACCACAGGCAATGTGCTGATATCAAAGAGCATCACAAAGGGTGAGATATTTGTGTTCCCAAAAGGCCTAGTTCACTTCCAAAAGAACAATGGCTATGAACCTGCTACGGTCATTGCAGCCTTCAATAGCCAATTGCCAGGCACACAGTCCATTGCTCTCACCTTGTTTACAGCAACACCACCTGTTCCAGATAATGTTCTGACCAAGGCATTCCAGATTGATACCAAGGAGGTTGAGAAAATTAAGTCTAAGCTTGCACCAAAGAAATGA 654 0.4648 MKLFLLTLPLVLLMLTTATASDPDPLQDLCVADPASAVKVNGFTCKDASKVNASDFFSAILAKPGATNNTYGSIVTGANVEKIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGTLDVGFITTGNVLISKSITKGEIFVFPKGLVHFQKNNGYEPATVIAAFNSQLPGTQSIALTLFTATPPVPDNVLTKAFQIDTKEVEKIKSKLAPKK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02692 217 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 215 - -
Cca03g02692 217 SUPERFAMILY RmlC-like cupins 22 212 IPR011051 -
Cca03g02692 217 Pfam Cupin 61 206 IPR006045 -
Cca03g02692 217 ProSitePatterns Germin family signature. 102 115 IPR019780 GO:0030145
Cca03g02692 217 CDD cupin_OxOx 22 213 - -
Cca03g02692 217 SMART Cupin_1_3 58 207 IPR006045 -
Cca03g02692 217 Gene3D Jelly Rolls 21 215 IPR014710 -
Cca03g02692 217 PANTHER GERMIN-LIKE PROTEIN 9 215 - -
Cca03g02692 217 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Cca03g02692 217 PRINTS Germin signature 137 157 IPR001929 GO:0030145
Cca03g02692 217 PRINTS Germin signature 170 185 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02692 Cca-Chr3 48218635 48220738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02692 10 217 Miscellaneous Gene Families AT3G05930 57.346 1.80e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02692 - - gmx:100302722 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02692 03 48218635 48220738 Cca03g02692 03 48218635 48220738 ECH
Cca03g02692 03 48218635 48220738 Cca02g01364 02 32084548 32086219 PCT