Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01364 ATGAAGGTGGCAAAGTTGTTGGTTGTGGTCACTCTGGCTCTGCTCTTAGCCACCACTTTCTCAGCAGATCCTGACCTTCTTCAAGACCTCTGTGTTGCCGACTTTGCCTCCGGTGTGAACGTGAATGGATTCACATGCAAAGAGGCATCCAAGGTAAATGTCACGGATTTCTTCTCCAACATACTAGCTAAACCAGGAGGCACCCCCAACACCTATGGCTTATCAGTGACAGGAGCCAACGTTGAGAAAGTGGCAGGACTCAACACCCTTGGTGTGTCTCTCGCAAGGATAGACTTTGCCCCTGGTGGCCTCAACCCACCTCACACACACCCACGTGCCACTGAGATAGTGTTTGTGCTTCAAGGTCAACTAGAAGTGGGGTTCATCACCACAGCCAATGAGCTTATGTCAATGATCATCAACGAGGGTGACATATTTGTGTTCCCAAAAGGGTTGGTTCACTTCCAAAACAACAATGCTAATGTTGCTGCTGCTGTCATTTCAGCCTTCAATAGCCAACTTCCAGGGACACAGTCCATAGCTACCACCTTGTTTGCTGCCACGCCATCTGTTCCAGACCATGTCTTGACCAAGACCTTCCAGGTTGGGACCAACGAGGTTCAGGAAATCAAGTCTAGGTTTCCAGTTCCACCTAAGAATTGA 663 0.4902 MKVAKLLVVVTLALLLATTFSADPDLLQDLCVADFASGVNVNGFTCKEASKVNVTDFFSNILAKPGGTPNTYGLSVTGANVEKVAGLNTLGVSLARIDFAPGGLNPPHTHPRATEIVFVLQGQLEVGFITTANELMSMIINEGDIFVFPKGLVHFQNNNANVAAAVISAFNSQLPGTQSIATTLFAATPSVPDHVLTKTFQVGTNEVQEIKSRFPVPPKN 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01364 220 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Cca02g01364 220 SMART Cupin_1_3 59 208 IPR006045 -
Cca02g01364 220 Pfam Cupin 64 208 IPR006045 -
Cca02g01364 220 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 216 - -
Cca02g01364 220 PANTHER GERMIN-LIKE PROTEIN 13 216 - -
Cca02g01364 220 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Cca02g01364 220 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Cca02g01364 220 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Cca02g01364 220 SUPERFAMILY RmlC-like cupins 23 215 IPR011051 -
Cca02g01364 220 CDD cupin_OxOx 23 214 - -
Cca02g01364 220 Gene3D Jelly Rolls 22 216 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01364 Cca-Chr2 32084548 32086219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01364 1 215 Miscellaneous Gene Families AT3G05930 52.315 3.43e-77 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01364 - - gmx:100791828 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01364 02 32084548 32086219 Cca02g01364 02 32084548 32086219 ECH
Cca03g02692 03 48218635 48220738 Cca02g01364 02 32084548 32086219 PCT