Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02679 ATGAAGCACACCAACATTCCAATTACATTGCAAATCCAATCTTTCATAATGACCAAGGAAACTTCTCTGTGCCTCTTGTTCCTCTCTTTTCTCATTATCTCCTCTTCAGGGACTAAATCCTCATCATCTGATGGAACCACATTCCTCCACAAAACCAAGATCTCCAATTCTCAGATTCGCTTCTCTGTAACAGATTACAAGGTTTTGAACACTCTTACCAACACCAACCTGTCGGTTGATTTCTTCTTGAATGAAAGCCTTGTTGAAAATTTTGTTGCTTCAAAATCATCTGTTGTTGCATGGCTCGAAGCTCATCTTATAAACATTCTTCCACAATTAGACATCAGAAGCATCATTGTTAGTTTTGGCAGTGAGCGTTTGGGCCAAGATGAGATGCCTTCACTCACACCTGTTCTGAAATCAATTCATTCGTTTCTCAGCAAGCTTCCAATTAGAAGGGAAATAAAACTCTCAGTGGCGTTTCCACTTTCATTCATAGAGAATTTGAATGCATCACATGAAAATGATCTCCTTAGGATTGTTTTGTTTATGAAGAAAATAGATTCATTTATCATGATAGAAGACAACATCGAAGAGGGATTGAGCATTGTTCAGTCTGTTATTGAGAGAGCCACCCTTGCTGCTTATATTCTCCCTTGCAAAGATGTTCCTGTGGTTCTTACAATCAAGAGCCAAGATGTTCCAAGTTCAATGGAATTATCTCAATTTAGTGAGGCAGTGTCAAAATATCTTGAAGCAGGATCCCATTTCACAAAAAGGATAGTTGCATTGTATGCACAAGTACACACAACCAAAGATTTTGTAGTGAGAGAGCTCATATGGGAAGAGGGAGAAGAGATATTTCCTTTGTCCCTTGGAGAAAATCCAAGCAAGGTCCACATGAGAAGAACCCTACAAGACACACCCAACTCACCTACCACTGTTTTCCCCACAAATCCAACCCCACCTACACCAGTAATCACACCTCCAGATACACCAACCATCATCACAGTTCCTTCCACCAATCCTGTCACAGTTTCCCCCACCAATCCAGGTTCAACACCTATCACAGTTCCTTCTACCACACCAGTTGCTCCCTTAGCCCCTACCAATCCGGTTACCAACCCTGTGACTTCTTATCCACCTCCGTCATCTGGAAGTGTTCCTGTCACAAGTTCCATTCCTCCTCCTTCTCCAAACACAAATGTTCAAACAGGGCAGAGTTGGTGTGTGGCAAAGACTGGAGTTCCAGAAGCTTCTCTTCAATCAGCACTGGACTATGCATGTGGAATGCCAAGTGTAGATTGTTCACAAATACAGCAAGGTGCGAGTTGTTATAATCCAAATTCTTTACAAAACCATGCTTCTTTTGCCTTTAACAGCTACTACCAAAAGAATCCTGCGCCAACAAGCTGTGACTTTGGAGGCACTGCTAACATAGTTAACACCAATCCAAGCTCGGGTTCTTGCGTTTTCCCATCATCTTCAGGAGCAGGCACATCCGGCTCTAGTAGTCCACCTTCAGTTTTAGGGTCCCAAAGCCCTTCTAATATAGATACCTCGTATTCAGCTGGTCTGAGACCTTTCCTTGGCTGCACGGTACTAATGATATCGTTAGTCACTGTTAGACTCACTATGTAA 1641 0.4229 MKHTNIPITLQIQSFIMTKETSLCLLFLSFLIISSSGTKSSSSDGTTFLHKTKISNSQIRFSVTDYKVLNTLTNTNLSVDFFLNESLVENFVASKSSVVAWLEAHLINILPQLDIRSIIVSFGSERLGQDEMPSLTPVLKSIHSFLSKLPIRREIKLSVAFPLSFIENLNASHENDLLRIVLFMKKIDSFIMIEDNIEEGLSIVQSVIERATLAAYILPCKDVPVVLTIKSQDVPSSMELSQFSEAVSKYLEAGSHFTKRIVALYAQVHTTKDFVVRELIWEEGEEIFPLSLGENPSKVHMRRTLQDTPNSPTTVFPTNPTPPTPVITPPDTPTIITVPSTNPVTVSPTNPGSTPITVPSTTPVAPLAPTNPVTNPVTSYPPPSSGSVPVTSSIPPPSPNTNVQTGQSWCVAKTGVPEASLQSALDYACGMPSVDCSQIQQGASCYNPNSLQNHASFAFNSYYQKNPAPTSCDFGGTANIVNTNPSSGSCVFPSSSGAGTSGSSSPPSVLGSQSPSNIDTSYSAGLRPFLGCTVLMISLVTVRLTM 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02679 546 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 143 506 - -
Cca03g02679 546 Gene3D - 402 498 - -
Cca03g02679 546 SMART X8_cls 408 492 IPR012946 -
Cca03g02679 546 MobiDBLite consensus disorder prediction 304 326 - -
Cca03g02679 546 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 143 506 IPR044965 GO:0004553|GO:0005975
Cca03g02679 546 MobiDBLite consensus disorder prediction 379 401 - -
Cca03g02679 546 Gene3D Glycosidases 34 196 - -
Cca03g02679 546 MobiDBLite consensus disorder prediction 379 396 - -
Cca03g02679 546 Pfam X8 domain 409 478 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02679 Cca-Chr3 48084313 48087747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02679 57 495 Glycoside Hydrolase AT4G26830 28.381 1.67e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02679 - - ccaj:109798054 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02679 03 48084313 48087747 Cca02g01384 02 32333236 32336963 PCT