Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02670 ATGGGGTCTGAAGGTCCTACAACACCGATAACAACAATTCATGTGACAGGATTTAAGAAGTTCCATGGAGTTTCAGAGAATCCAACAGAAACTATTGCCAACAATTTGACAGAGTACATGAATAAGAAGGGTCTGCCGAAGGGTTTAGTTATTGGGAGCTGCAGCATTCTTGAGACGGCTGGTCAAGGAGCACTTGTTCCACTCTACCAGAGATTACAATCCGCCATTATTGCCAAGGACTCTCAATCTTCAAATTCCAATAGAATTATTTGGctgcattttggagttaacagtggtgcaacaaggtttgctatagagaaccaagctgtcaatgaggctaatttccggtgccccgatGAAATGGGATGGAAGCCCCAGAAAGTCCCCATTGTTCCTTCGGATGGTGGAATTTCGCGAACAAGGGAGACTTCACTTCCTGTTGAGGAGATGACCAAAGCCTTGGCAGAGAAGGGATTTGATGTAATGGTATCAGATGATGCAGGAAGGTTTGTGTGCAATTACGTTTACTATCATTCCCTTCGCTTTGCCGAACTGAATGGGATCAAATCTCTTTTCGTGCACGTGCCACTCTTCGTGACAATAAATGAAGAGACTCAAATGCAATTCGCTGCTTCCTTGTTAGAGGTGCTTGCCTCTATACCTTAG 666 0.3844 MGSEGPTTPITTIHVTGFKKFHGVSENPTETIANNLTEYMNKKGLPKGLVIGSCSILETAGQGALVPLYQRLQSAIIAKDSQSSNSNRIIWLHFGVNSGATRFAIENQAVNEANFRCPDEMGWKPQKVPIVPSDGGISRTRETSLPVEEMTKALAEKGFDVMVSDDAGRFVCNYVYYHSLRFAELNGIKSLFVHVPLFVTINEETQMQFAASLLEVLASIP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02670 221 PANTHER BNAA09G15240D PROTEIN 1 220 - -
Cca03g02670 221 PANTHER PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED 1 220 IPR016125 -
Cca03g02670 221 CDD Peptidase_C15 12 219 IPR000816 GO:0005829|GO:0006508|GO:0016920
Cca03g02670 221 Gene3D - 10 220 IPR036440 -
Cca03g02670 221 PIRSF Pyrrolidone-crbxlat_pptds 10 220 IPR000816 GO:0005829|GO:0006508|GO:0016920
Cca03g02670 221 SUPERFAMILY Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 12 218 IPR036440 -
Cca03g02670 221 Pfam Pyroglutamyl peptidase 13 198 IPR016125 -
Cca03g02670 221 ProSitePatterns Pyrrolidone-carboxylate peptidase cysteine active site. 159 173 IPR033694 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02670 Cca-Chr3 47993872 47997132 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02670 K01304 - gmx:100789152 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02670 03 47993872 47997132 Cca02g01395 02 32443516 32447039 PCT