Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02655 ATGCTGCAGAGAATGGCGTACACGTTCTCGTTCCCGGAGGAGGTGCTGGAGCACGTGTTCTCGTTCATCGAGAGCGAGAAGGACCGGAACGCGATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAGGGTTTTCGTGGGGAACTGCTACGCTGTGAGCCCTATGATGGTGATCAAGCGGTTCCCGGAGGTGAGATCCATTGCGCTCAAAGGGAAGCCGCACTTTGCGGACTTCAATTTGGTTCCCGAGGGTTGGGGCGGTTACGTTTGCCCCTGGATCGCTGCCATGGCTTGCGCCTTTCCGTGGCTCGAGGAGATCAGACTCAAGAGGATGGTCATCACCGACGAGAGCCTTGAGCTCATCGCCAAGTCCTTCAAGAACTTCAAGGTGCTCGTTCTCACTTCGTGTGAGGGTTTCACCACTGATGGACTTGCCGCCATTGCTGCTAACTGCAGGAATTTGAGGGAGCTGGACTTGCAGGAGAGTGAAGTGGAGGACCTTAGTGGGCACTGGCTGAGCCATTTTCCTGATTCCTACACATCATTAGTTTCACTTAACATCTCTTGCTTAGGCAATGAGGTGAGTTTATCTTCACTAGAGCGACTACTTGGGAGGTGTCCCAACCTGCAGACCCTCCGTCTCAACCGTGCTGTGCCCCTTGATAGACTACCCAACTTACTTCGCCGGTGTCCTCAGCTGGTTGAGTTAGGCACAGGAGTCTACTCAACTGAGATGCGACCGGAGGTCTTCTCAAATCTTGAGGCAGCATTTTCTGGGTGCAAGCAGTTGAAGAGCTTGTCTGGCTTTTGGGATGTGCTCCCATCGTACCTTCCAGCTGTTTATCCCATCTGCTCCAGGCTAACATCGCTAAACTTGAGTTATGCTATTGTTCAAAGCTCTGATCTTATTAAGCTCATCAGTCAATGCCCGAGTTTGTTGCGGTTATGGGTGCTGGATTACATAGAAGATGCTGGTCTTTATGCCCTTGCTGCATCATGCAAGGATCTAAGGGAGTTAAGGGTGTTTCCGTCTGACCCATTTGGTTTAGAACCGAATGTTGCATTGACAGAACAGGGCCTTGTGTCTGTGTCTGAAGGTTGCCCCAAGCTCCAGTCAGTTCTATATTTTTGTCGTCAAATGTCTAATGCAGCACTAAATACAATTGCGCGGAACAGGCCTAATTTGACTCGTTTTCGGCTTTGTATTATTGAACCTCGAACTCCTGATTATATTACCCTTGAACCGCTGGATTCTGGTTTTGGAGCTATTGTAGAGCACTGCAAGGATCTTCAACGCCTATCCCTATCTGGTCTTCTTACCGATCGTGTTTTTGAGTATATCGGGACTTATGGGAAGAAGCTGGAGATGCTATCCGTGGCTTTTGCTGGAGATAGTGATTTGGGACTTCATCATGTGCTGTCTGGGTGTGATAATCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAGGCCCTTTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTCAGTGAGTTATGGAGCATGTAAGCTACTGGGTCAGAAAATGCCCAGACTCAACGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGAGAGTTGTCCTGTTGAGAAGCTTTATATATACAGGACTATTGCTGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACAATGGAAGATGATTCTTCACTAGGGCTTGAGTGA 1764 0.4977 MLQRMAYTFSFPEEVLEHVFSFIESEKDRNAISLVCKSWYEIERWCRRRVFVGNCYAVSPMMVIKRFPEVRSIALKGKPHFADFNLVPEGWGGYVCPWIAAMACAFPWLEEIRLKRMVITDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSLNISCLGNEVSLSSLERLLGRCPNLQTLRLNRAVPLDRLPNLLRRCPQLVELGTGVYSTEMRPEVFSNLEAAFSGCKQLKSLSGFWDVLPSYLPAVYPICSRLTSLNLSYAIVQSSDLIKLISQCPSLLRLWVLDYIEDAGLYALAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCPKLQSVLYFCRQMSNAALNTIARNRPNLTRFRLCIIEPRTPDYITLEPLDSGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTIAGPRLDMPGFVWTMEDDSSLGLE 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02655 587 SUPERFAMILY RNI-like 32 536 - -
Cca03g02655 587 SMART fbox_2 11 52 IPR001810 GO:0005515
Cca03g02655 587 Pfam F-box 9 49 IPR041567 -
Cca03g02655 587 Pfam Transport inhibitor response 1 protein domain 68 114 IPR041101 -
Cca03g02655 587 Gene3D - 3 47 - -
Cca03g02655 587 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 9 579 - -
Cca03g02655 587 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 9 579 - -
Cca03g02655 587 SMART LRR_CC_2 373 397 IPR006553 -
Cca03g02655 587 SMART LRR_CC_2 433 456 IPR006553 -
Cca03g02655 587 SMART LRR_CC_2 315 338 IPR006553 -
Cca03g02655 587 SMART LRR_CC_2 131 156 IPR006553 -
Cca03g02655 587 SMART LRR_CC_2 106 130 IPR006553 -
Cca03g02655 587 SMART LRR_CC_2 482 506 IPR006553 -
Cca03g02655 587 Gene3D Ribonuclease Inhibitor 48 578 IPR032675 -
Cca03g02655 587 SUPERFAMILY F-box domain 8 43 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02655 Cca-Chr3 47899619 47903208 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02655 K14485 - gmx:100816241 1132.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02655 03 47899619 47903208 Cca03g02655 03 47899619 47903208 ECH
Cca03g02655 03 47899619 47903208 Cca02g01195 02 29584933 29589146 PCT