Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01195 ATGAATTATAGGAACTTGAGGGAGTTGGAGTTGCGGGAGAGTGAAGTGGAGGACATTTGTGGGCATTGGCTAAGCCATTTTCCTGATTCGTACACGTCGTTGGTTTCCCTTAACATTTCTTGCTTAGGCAATGAGGTGAATTTGTCTGCCCTAGAGCGTCTGGTTAGTAGGTGTACCAACCTGCAGACTCTCCGCCTCAACCGTGCAGTGCCCCTTGAGAAGCTAGCCAACCTTCTTCGCGGTGCTCCTCAGCTCGTTGAGTTGGGCACCGGAACCTACTCGACGGAGATGCGACCGGAGGTCTTTGCAAACTTAGCAGAAGCATTTTCTGGGTGCAAGCAATTGAAGAGCTTGTCTGGATTCTGGGACGTGCTCCCATCCTACCTTCCGGCTCTTTATCCTGTCTGCTCCAGCCTCACGTCATTAAACTTGAGTTATGCAACTATTCAAAGCTCTGACCTTATCAAGCTTGTTAGTCAATGTGAGAGTTTGCAGCgtttatggGTGCTGGATTACATAGAAGATGCTGGACTTGAAGTGATTGCTGCATCGTGTAAGGATCTGAGGGAGTTGAGGGTCTTTCCCTCTGACCCATTTGGGTTAGAACCAAATGTTGCGTTGACAGAGCAGGGACTTGTTTCTGTCTCTGAAGGCTGCACCAAGCTTCAGTCAGTTCTATATTTTTGTCGTCAAATGTCGAATGCTGCCTTGGATACAATTGCTAGGAACAGACCTAATATGACTCGTTTTAGGCTCTGTATTATTGAGCCTCGAGCTCCTGACTATCTTACCCGTGAACCTCTGGATGCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCGGCGCCTTTCCCTTTCTGGGCTCCTTTCGGATCGAGTTTTTGAGTATATTGGGACTTATGGTAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGACACTGATTTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTTTTGGCGAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTTGGTGAGTTACGGAGCGTGTAAACTGCTGGGTCTGAAACTGCCGAGACTTAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGATAGTAGTCCTGTTGAGAAGCTATACATATACAGGACCGTTTCTGGGCCAAGATTGGACATGCCAGGCTATGTATGGAGAATGGAAGACGATTCTGCATTAAGGGTTTCTTGA 1302 0.4762 MNYRNLRELELRESEVEDICGHWLSHFPDSYTSLVSLNISCLGNEVNLSALERLVSRCTNLQTLRLNRAVPLEKLANLLRGAPQLVELGTGTYSTEMRPEVFANLAEAFSGCKQLKSLSGFWDVLPSYLPALYPVCSSLTSLNLSYATIQSSDLIKLVSQCESLQRLWVLDYIEDAGLEVIAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCTKLQSVLYFCRQMSNAALDTIARNRPNMTRFRLCIIEPRAPDYLTREPLDAGFGAIVEHCKDLRRLSLSGLLSDRVFEYIGTYGKKLEMLSVAFAGDTDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGLKLPRLNVEVIDERGPPDSRPDSSPVEKLYIYRTVSGPRLDMPGYVWRMEDDSALRVS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01195 433 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 13 424 - -
Cca02g01195 433 SUPERFAMILY RNI-like 4 381 - -
Cca02g01195 433 SMART LRR_CC_2 328 352 IPR006553 -
Cca02g01195 433 SMART LRR_CC_2 219 243 IPR006553 -
Cca02g01195 433 SMART LRR_CC_2 136 160 IPR006553 -
Cca02g01195 433 SMART LRR_CC_2 279 302 IPR006553 -
Cca02g01195 433 Gene3D Ribonuclease Inhibitor 1 424 IPR032675 -
Cca02g01195 433 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 13 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01195 Cca-Chr2 29584933 29589146 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01195 K14485 - gmx:100809794 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01195 02 29584933 29589146 Cca02g01195 02 29584933 29589146 ECH
Cca03g02655 03 47899619 47903208 Cca02g01195 02 29584933 29589146 PCT