Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02642 ATGACGGGCCAAGTGTTGCTCACCAAGGGCCGCCGATGCGCCGAGGAGGACCAGAACCCGGCGTCGCCCGTGGCGCTTCTTCTGGCGGCGCTCAGGAAATCCATGGTGGCCTGCAGCGTCGACAGTCCCGACGATGTAATCTCCGCCGTTCATCATCCCATGGAGATCGGATGGCCCACAAACGTTAAGCATGTCAGTCATGTCACCTTCGATCGCTTCAATGGCTTCCTCGGTCTCCCCCTTGAGTTAGAAGTTCATGTCCCCGCTCCGGTTCCTAGTGCTAGTGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTCAAAAGGGAACAGTGTCCCCACTATTCTATTGCTAATGCAGGAGCGATTATACTCACAGGGAGGCTTAAAGGCTGAAGGGATATTTCGCATAAATCCAGAAAACAGTCAAGAAGAGCATTTGAGGGAGCAGTTGAATAGTGGCATTGTGCCAGATGACATTGATGTCCATTGTTTGGCTGGCCTAATCAAGGCATGGTTCAGAGAACTTCCTTCAGGAGTGCTAGACGGACTTTCCCCCGAGCAAGTTCTTGAGTGCAATACAGAAGAAGAATCTGTCCAGCTTGTGAAGCAACTAAAGCCAACTGAATCAGCCTTGCTCAACTGGGCTATTGATCTTATGGCTGATGTTGTAGAAGAAGAGGATCATAACAAAATGGATGCAAGAAACATTGCAATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCACTAACTGCTCTCATGCATGCTGTCCAAGTGATGAATTTACTGAAGACCCTAATACTGAAGACACTTAGAGAACGTGAAGAAACAGCAGCAGCAGGATATTCTCCCATGTCATCTCGTTCATCTGAAAGCCAATCTGAGGATGACTATGGTAGTCAGCAAGAAATGGATACCAGTGATGAATTGAGAGGGACCAAGTCAGATGATGATGATGATGTTAGCTACAGTCATGTCAGTGAAGAGGAAGGGGAGGCTAATGCATCAGTAAGTGAGATAGTGGAATGCTTCTTGAAGCGTTTGGATGAGAAAACAAAAAGATTCTCAGAAGAACCTGCAGGGTGTTTGCAAGAGAAGTTAGAGAGCCCCAAGAGTTGCTCTGACTATAACTTGGAATCTGCTTTATCATTTACTGATATCAAAACTGTGAATTCTTGCTCTAGTCCCTCTTATGAAGATGACTCAAGAACAACTCTGACTGCTGAGGAATCAAATGCTGACACAAGTAGTCCATCAATAGAAAGTGCTAGCACCAATGATGTGGAGATGGTTGATAAATTTACAGATTCTGTTTCTCTAGTTCCATTGTTTGCATCTAGTTAA 1365 0.4564 MTGQVLLTKGRRCAEEDQNPASPVALLLAALRKSMVACSVDSPDDVISAVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHLREQLNSGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEESVQLVKQLKPTESALLNWAIDLMADVVEEEDHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLREREETAAAGYSPMSSRSSESQSEDDYGSQQEMDTSDELRGTKSDDDDDVSYSHVSEEEGEANASVSEIVECFLKRLDEKTKRFSEEPAGCLQEKLESPKSCSDYNLESALSFTDIKTVNSCSSPSYEDDSRTTLTAEESNADTSSPSIESASTNDVEMVDKFTDSVSLVPLFASS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02642 454 MobiDBLite consensus disorder prediction 314 328 - -
Cca03g02642 454 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 5 454 - -
Cca03g02642 454 MobiDBLite consensus disorder prediction 399 435 - -
Cca03g02642 454 ProSiteProfiles CRIB domain profile. 56 69 IPR000095 -
Cca03g02642 454 SMART PBD_5 56 90 IPR000095 -
Cca03g02642 454 Pfam RhoGAP domain 118 252 IPR000198 GO:0007165
Cca03g02642 454 Gene3D Rho GTPase activation protein 88 281 IPR008936 GO:0007165
Cca03g02642 454 MobiDBLite consensus disorder prediction 289 307 - -
Cca03g02642 454 CDD RhoGAP 118 268 - -
Cca03g02642 454 Gene3D CRIB domain 51 87 IPR036936 -
Cca03g02642 454 SUPERFAMILY GTPase activation domain, GAP 97 275 IPR008936 GO:0007165
Cca03g02642 454 ProSiteProfiles Rho GTPase-activating proteins domain profile. 101 282 IPR000198 GO:0007165
Cca03g02642 454 PANTHER MKIAA1688 PROTEIN 5 454 IPR044785 GO:0005096
Cca03g02642 454 Pfam P21-Rho-binding domain 55 83 IPR000095 -
Cca03g02642 454 SMART RhoGAP_3 115 278 IPR000198 GO:0007165
Cca03g02642 454 CDD CRIB 54 84 - -
Cca03g02642 454 MobiDBLite consensus disorder prediction 285 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02642 Cca-Chr3 47775349 47778789 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02642 - K20642 gmx:100812700 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02642 03 47775349 47778789 Cca03g02642 03 47775349 47778789 ECH
Cca03g02642 03 47775349 47778789 Cca02g01186 02 29447523 29450531 PCT