Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01186 ATGACCGGACTCCTCATGGTTACCAAGGGCGGAGGATGCGGCGGCGGACCCAAGAGGACCAGGGCGCCGCCAACCGCCCAGGAAGAAGAGCAGAACCACCTCTCCCTCCTCGCTTTTCTCCTTGCCGCCATCAGAAAATCTATGGTCTCGTGCAGGGTGGACCCCCCCGACGACGTAATCTCCACCGTCCATCACATGGAGATCGGATGGCCAACCAACGTTCAACACATCACCCATGTCACCTTCGACCGCTTCAATGGCTTCCTCGGTCTCCCCCTCGAATTCCAAGTCCAGATCCCTTCTCGGGTCCCCAGTGCTAGTGTAAGTGTGTTTGGCGTCTCAGCAGAGTCTATGCAGTGTTCTTATGATTCAAAAGGAAACAGTGTCCCCACTATTCTCTTGCTAATGCAGGACCGTTTATACTCGCAGGGAGGCGTAAAGGCTGAAGGAATATTTCGGATAAATCCAGAGAATAGTCAAGAGGAGCATGTGAGGGACCAGTTGAATAGGGGCATTGTGCCGGATGACATTGATGTCCACTGTTTAGCCGGACTAATTAAAGCATGGTTTAGAGAACTACCTTCGGGAGTGCTAGATGGACTTTCTCCGGAGCAAGTTCTTCAGTGCAACACGGAAGAAGAATCTGTTGAGCTTGTGAAGCAGCTAAAGCCAACTGAGTCTGCCTTACTTAACTGGGCTATTGATCTCATGGCTGATGTTGTAGAGGAGGAGGAGTTTAACAAAATGAATGCAAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGATGTCTGATCCTCTAACGGCCCTGATGCATGCGGTTCAAGTGATGAACTTACTCAAGACACTTATAATGAAGACACTCAGAGAACGCGAAGAAACAGCCACGGGTGGGTATTCTCCCGTGTCATTTCATTCATCAGATCGCCAGTGTGAGGATGAATATGACAGTCAGCGAGAAATGGACACAAGCGGTGAATTGAGAGGAACCAAATCAGATTATGATGATCATGCTCACTATGGTCATAGCAGTGAAGGGGAAGACGGGGAGGCTGAATCTTTAAGCGAGATAGAGGAGTGCTTCTTGAAGCGGTTGGATCAGAGCACAAAAGGATTCTCAGAAGAACCTGCAGGTCATTTGCAAAAGCATGTTAGCACCAGAAGTTGCTCTGACTATGGCATGGAACCTTCTATATCTGTTACTGATTTGGCCTCAAGTGTTGACAGAAGTAGTTCATCAGTAGGATGTACAAACACCAAAGACGTGGAGATGATGGATAAATTTGCGGATTCTATAGCACCTCTGCCACTGCTTGCTTCTAGTTAA 1332 0.482 MTGLLMVTKGGGCGGGPKRTRAPPTAQEEEQNHLSLLAFLLAAIRKSMVSCRVDPPDDVISTVHHMEIGWPTNVQHITHVTFDRFNGFLGLPLEFQVQIPSRVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQDRLYSQGGVKAEGIFRINPENSQEEHVRDQLNRGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESVELVKQLKPTESALLNWAIDLMADVVEEEEFNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETATGGYSPVSFHSSDRQCEDEYDSQREMDTSGELRGTKSDYDDHAHYGHSSEGEDGEAESLSEIEECFLKRLDQSTKGFSEEPAGHLQKHVSTRSCSDYGMEPSISVTDLASSVDRSSSSVGCTNTKDVEMMDKFADSIAPLPLLASS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01186 443 Pfam RhoGAP domain 130 264 IPR000198 GO:0007165
Cca02g01186 443 MobiDBLite consensus disorder prediction 9 28 - -
Cca02g01186 443 Gene3D CRIB domain 64 98 IPR036936 -
Cca02g01186 443 ProSiteProfiles CRIB domain profile. 68 81 IPR000095 -
Cca02g01186 443 Pfam P21-Rho-binding domain 67 95 IPR000095 -
Cca02g01186 443 SMART RhoGAP_3 127 290 IPR000198 GO:0007165
Cca02g01186 443 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 1 416 - -
Cca02g01186 443 SUPERFAMILY GTPase activation domain, GAP 109 287 IPR008936 GO:0007165
Cca02g01186 443 MobiDBLite consensus disorder prediction 309 351 - -
Cca02g01186 443 PANTHER MKIAA1688 PROTEIN 1 416 IPR044785 GO:0005096
Cca02g01186 443 SMART PBD_5 68 102 IPR000095 -
Cca02g01186 443 MobiDBLite consensus disorder prediction 296 356 - -
Cca02g01186 443 ProSiteProfiles Rho GTPase-activating proteins domain profile. 113 294 IPR000198 GO:0007165
Cca02g01186 443 CDD RhoGAP 130 286 - -
Cca02g01186 443 Gene3D Rho GTPase activation protein 99 294 IPR008936 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01186 Cca-Chr2 29447523 29450531 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01186 - - gmx:100801481 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01186 02 29447523 29450531 Cca02g01186 02 29447523 29450531 ECH
Cca03g02642 03 47775349 47778789 Cca02g01186 02 29447523 29450531 PCT