Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02637 ATGAACAAGATTCCGTGGATGAAACAGCAATGGCGAGGCATAGTGAAAGTGCGTCTGAAGTGGGTAAAGAACCGAACCCTCGATCACGTGATCGACAAGGAAACCGACCTCAAGGCCGCGTGCCTCCTCAAGGACGCCATCGTCCGCTCCTCCACCGCCTTCCTCACCGCCAACTCCGTCGCCGACTGGCAGAAGCTCCTCGGCCTCACCGTCCCCGTCCTCCGCTTCCTCCGCCGCTACCCCACCCTCTTCCACGAGTTCCCCCACCCCCGCTGGCCCTCCCTCCCCTGCTTCCGCCTCACCGACACCGCGCAATTCCTCCACTCGCAGGAACTCGCTCTCCACCAAACGCACCAAAACGACGCCGTCAGCAACCTCTCCAAGCTCCTCATGATGGCCCGCTCACGCGCCCTCTCCCTCCACTCTCTCCACGCGCTCAAGTGGGACCTTGGCCTACCCGACACCTTCCACAAAACCCTAGTTCCGCAATACCCTGACACCTTCCAATTCCTGAACTCCCCCAACGGCGTCGTTTCGCTTAAACTAACGCGCTGGCCCGAGGAACTCGCGCTTTCCGCTTTGCAGAGGACCAACGAGGGTGGGACCCACTACCGGGAATTCAAGCGGGGGCAATCGGCGTTGGCTTTTCCGATGAAGTTTCCGAGAGGCTACGGTGCTCAGAAGAAGGTTAGGGCGTGGATGGAGGAGTTCCAGAAGCTTCCCTATCTCTCTCCTTATTCCGACTCCTCCAAGATTGACCCCAATAGTGACTTAATGGAGAAGCGCGTTGTTGGGGTTCTGCACGAGCTTTTGAGTCTCACTCTGCACAAGAAAACCAAGAGGAACTACTTGAGGGGGTTGAGGGAAGAGTTGAATCTTCCGCATAGGTTTACCCGCATTTTCACGAGGTACCCGGGGATTTTTTACCTCTCGTTGAAGTGCAAAACCACGACGGTTACTCTCAGGGAAGGGTACCGGAGTGGGAAGCTGGTGGACCCGCACCCTCTTGCTCGCCATAGGGATAAGTTCTACCATGTGATGCAGACGGGGCTTCTCTATCGCGGGGATGGCTCGTTGAAACGTGACGAGAACGATTCGCTGCTTCGGGATGATGAACTCAGGAGTGAAGACTCTgaggaggaggaggaggaggaggaggGAGAGCTACGGGGTGATAATTGCTTTAAAGAAAACCATTTGCTCATTGCTCCCCAGGAAATTCTGCTGGTCTTGAAGGGGATCCTTAAGCCAGCTTGTTAA 1260 0.5516 MNKIPWMKQQWRGIVKVRLKWVKNRTLDHVIDKETDLKAACLLKDAIVRSSTAFLTANSVADWQKLLGLTVPVLRFLRRYPTLFHEFPHPRWPSLPCFRLTDTAQFLHSQELALHQTHQNDAVSNLSKLLMMARSRALSLHSLHALKWDLGLPDTFHKTLVPQYPDTFQFLNSPNGVVSLKLTRWPEELALSALQRTNEGGTHYREFKRGQSALAFPMKFPRGYGAQKKVRAWMEEFQKLPYLSPYSDSSKIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRGLREELNLPHRFTRIFTRYPGIFYLSLKCKTTTVTLREGYRSGKLVDPHPLARHRDKFYHVMQTGLLYRGDGSLKRDENDSLLRDDELRSEDSEEEEEEEEGELRGDNCFKENHLLIAPQEILLVLKGILKPAC 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02637 419 MobiDBLite consensus disorder prediction 363 390 - -
Cca03g02637 419 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 7 396 IPR045040 GO:0003723
Cca03g02637 419 Coils Coil 368 388 - -
Cca03g02637 419 MobiDBLite consensus disorder prediction 374 388 - -
Cca03g02637 419 Pfam Plant organelle RNA recognition domain 22 350 IPR021099 GO:0003723
Cca03g02637 419 PANTHER OS04G0546100 PROTEIN 7 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02637 Cca-Chr3 47735242 47737759 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02637 - - gmx:100808403 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02637 03 47735242 47737759 Cca03g02637 03 47735242 47737759 ECH
Cca03g02637 03 47735242 47737759 Cca02g01154 02 28954659 28957187 PCT