Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01154 ATGAGTGAGCTTGACCAGTGTGAAAGTGGAATTGAATTGAGGAGCAGAGCACACGACCAAATCTTGGCGTCATATCTTTCCCAATACGTGTCGTGCGTGCCCGTGCGGCTAGTTCAAGGAATGTTGTCCAAAACCAAAATCAACACTCTCTCCAACCTCAACGCAAGATCAATATCAAGCCTCAAAGTGGTGTGGCGCAAGGACCAAGCACTAGACCGAGCCCTAGAGCACGACAAGCGTTACAAGCAATGTGCCCGCGTCGTCAAAGAAGTCCTCAACGAGCCTGGTCAAGTCATCCCTCTTCGCTACCTCGAAAAGCGCCGCCAAAGGATGCGCCTCAAGCTCAAAGCAGAAACCTTTCTCAACCAAAACCCCGGCTTGTTCGATGTCTACTACGATCGCGTCAAACCCAAAACCCAACCGGTCCGCTTTATCCGCGCCACCGATCGCCTTCGCCAATTTCTTCAGGAAGAGCAACGAATTCTCAAAGAGAACGAGCCCTTCGTTGTGTCCAAGTTGTGTAAACTGTTGATGATGTCGAAGAATAAGGTTGTTAGTGCTGATAAGTTGCTCCACGTCAAGAGGGAGTTTGGATTCCCGAACGATTTTTTGGTGGATTTGGTTCCTAGGTATCCTCAATATTTTAGGCTAACTGGGTTTCCTGGGGAGGGGAAATCGTTTCTAGAACTGGTTAATTGGAACCCCGAGTTTGCAAAATCTGTTATTGAGCAAAGGGCAGAAGAGGAGAGTGAGCGTTTGGGGATTAGGGTTAGGCCTAGTTTCAATGTGGAGCTTCCCCGAGGGTTTGTTTTGAAGAAGGAGATGAGGGAGTGGGTTAGGGATTGGATGGAGCTTGATTATGTATCCCCTTATGAGGATGTGTCCCATTTGGATCAGGCTTCTAGAGAGATGGAGAAGAGGTCTGTTGGAGTGTTCCATGAGCTGCTTTCACTTTCCTTGCACAAGAGGATTCCTGTGCCCATCCTTGGAAAGTTTTGTGATGAGTATAGGTTTTCAAATGCATTTTCCAGCACTTTCACAAGGCATTCCGGGATATTTTATTTGTCCTTGAAAGGTGGCATTGAGACGGCTGTGTTGAGGGAAGCATATAAGGGTGATGAGTTGATTGACCGGGATCCGCTGCTTCGGATAAAAGATAAGTTTATTGAGTTGTTGGAGGAGGGGTGGCGGCAAAGGGCGGAGCAGTTGAGGTTGAAACAAGAGAAGATTAAGGAAGATATGATGCTAATGGCCACGAAAGTTGGTGAGTAG 1272 0.4764 MSELDQCESGIELRSRAHDQILASYLSQYVSCVPVRLVQGMLSKTKINTLSNLNARSISSLKVVWRKDQALDRALEHDKRYKQCARVVKEVLNEPGQVIPLRYLEKRRQRMRLKLKAETFLNQNPGLFDVYYDRVKPKTQPVRFIRATDRLRQFLQEEQRILKENEPFVVSKLCKLLMMSKNKVVSADKLLHVKREFGFPNDFLVDLVPRYPQYFRLTGFPGEGKSFLELVNWNPEFAKSVIEQRAEEESERLGIRVRPSFNVELPRGFVLKKEMREWVRDWMELDYVSPYEDVSHLDQASREMEKRSVGVFHELLSLSLHKRIPVPILGKFCDEYRFSNAFSSTFTRHSGIFYLSLKGGIETAVLREAYKGDELIDRDPLLRIKDKFIELLEEGWRQRAEQLRLKQEKIKEDMMLMATKVGE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01154 423 Pfam Plant organelle RNA recognition domain 67 396 IPR021099 GO:0003723
Cca02g01154 423 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 43 417 - -
Cca02g01154 423 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 43 417 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01154 Cca-Chr2 28954659 28957187 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01154 - - gmx:100778092 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01154 02 28954659 28957187 Cca02g01154 02 28954659 28957187 ECH
Cca03g02637 03 47735242 47737759 Cca02g01154 02 28954659 28957187 PCT