Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02631 ATGGATATGCCTACCATCGATGTCGAGCTTGGGCCTGAGAAGCTTGAAGATGAGAAACAAGCAGGTCCCTTGTTGCATTGTGATCTCTGTGATACAGAAGTAGTTCACAAGTTGGCTCAAATGTTCCTTCCAGGTCTAGGCAGTGCTTGTGTTGATAACACATCAGGTGATCTCTTCAAGACGCCTGGTTCAGTGGCTGTTGATTTGAGAAAGGAAATGATAGAGTATGTTACCCAAAGAAGTGAGTCATTTGTTGCTGAGTCTGTTATCTTGGAAGGTGGTCCAGACGGTGAAGAATCTGACCATCCTTTTGATATCATATCTAATTTCGTTGACGATTTTGTGAGTTTGAAGAGGAATCTGTTTAGCCGGGTTTCAGGATGGCTGCTGAGTGAAAAGAGGGAAGACAAAATAGATGATTTTGTTCAAGAGATGGAAATGAATGGGTTTTGGACACTTGATAGGAGAGAAACAATTGCAGAAACTTTGCTCAAGAATGTTGACTTTGAGAACAAGTATCATTGCAGCATGAGTTTTAATTCTGCGGAAGAACTTGCCAATCATGTTGATAGCTGCAACTTTAGATCTGTGATATGCGAAAATGAGGGATGCAATTCCAGATTTTGTGCAGCTCATTTAAAGAATCATGATTCAAGTTGTCCTTTTAAGATAATTTCATGTGAACAGAAGTGTTCTGCTAGTGTTATGAGACGTGACATGGATAGGCATTGTATAACTGTTTGTCCAATGAAAATTGTAAATTGTCCTTTTTATGCAGTGGGTTGTCGGTCAGCTGTTGCACAATGTCAGATTGAAAAACATCGTTCAGATGAGATTAATTCTCACTTGTGGCACTTGCTTAAAGGCACGTACAAGGAGGCATCTGGGGATGATCTTACTCGACGAGTGGAGCAAATTGTACAGGCATCATCAGGCAACCGTTTAGCAGAGGCTCGGGATGTTAGATCTTTGAACTTCATTGTCAAGGATATTGAGGCTAAGCTAGGACCTTTCGAAATGACTCCTGTAGAGAAAAATAGTGCGGTGACTGTTGCCAAGGATGGTGATAAGGAAGGTGGTGAGACTGATACAATTGTCAGTGAAAGGAGCATGAAGGCTTCAGATGTTAATTCATCAGATAAAGCTGAAGTGAGTGACATGGTGAACATGAATAATGCAGAGAATACCACTAAGAATGAAGGTAGTGAACTTAGTCCTGTTGAAAAAAAAGGCTCTGAAGAGAGGATACAAACTTCAGATAAGGAATATTTATCTGATAAAACCGAAATTGGCCCCTTGACTGATGAGAACAAAGATGCTGCAGCTGGTGAATTAAAAATCGAGGGTAACGAAGCGAGCACTAAAAAACATATGGAAAAATTATCAAATGAAGAAGTTAGTGCCAAAAATGAGGCCAGTGCAGATAATAGCATCAAATTAAAATCTAATGAAGACAGTAAATTCGAAGATAAGGACAAAGAACAGAGGATAGACAATTCAGAGAAGGAAACTAAGGATGGTGCAGAGAATAATGTTGAGAACAAAGAAAGTGGAGGTGATGAGTTGAAAAAGAACATACACACTTCAGAAGTAACTAAGAGTGGTGCAGAGAATAATGTTGAGAACAAAGAAAGTGGAAGTGATGAGTTGAAAAAGAACATACACACTTCAGAAGTAACTAAGGGTGGTGCAGAAAATAATGTTGAGAATAAAGAAAGTGGAGGTGATGAATTGAAAAAGAGCATACACACTTCAGAAGTAACTAAGGGTGGTGCACAGAATAATGTTAAGAACAAAGAAAGTGAAGATGATGACTTGAAAAAGAGCACAAACACTTTAGAAGTGTAA 1848 0.3912 MDMPTIDVELGPEKLEDEKQAGPLLHCDLCDTEVVHKLAQMFLPGLGSACVDNTSGDLFKTPGSVAVDLRKEMIEYVTQRSESFVAESVILEGGPDGEESDHPFDIISNFVDDFVSLKRNLFSRVSGWLLSEKREDKIDDFVQEMEMNGFWTLDRRETIAETLLKNVDFENKYHCSMSFNSAEELANHVDSCNFRSVICENEGCNSRFCAAHLKNHDSSCPFKIISCEQKCSASVMRRDMDRHCITVCPMKIVNCPFYAVGCRSAVAQCQIEKHRSDEINSHLWHLLKGTYKEASGDDLTRRVEQIVQASSGNRLAEARDVRSLNFIVKDIEAKLGPFEMTPVEKNSAVTVAKDGDKEGGETDTIVSERSMKASDVNSSDKAEVSDMVNMNNAENTTKNEGSELSPVEKKGSEERIQTSDKEYLSDKTEIGPLTDENKDAAAGELKIEGNEASTKKHMEKLSNEEVSAKNEASADNSIKLKSNEDSKFEDKDKEQRIDNSEKETKDGAENNVENKESGGDELKKNIHTSEVTKSGAENNVENKESGSDELKKNIHTSEVTKGGAENNVENKESGGDELKKSIHTSEVTKGGAQNNVKNKESEDDDLKKSTNTLEV 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02631 615 MobiDBLite consensus disorder prediction 542 558 - -
Cca03g02631 615 SUPERFAMILY TRAF domain-like 197 271 - -
Cca03g02631 615 MobiDBLite consensus disorder prediction 596 615 - -
Cca03g02631 615 Coils Coil 533 553 - -
Cca03g02631 615 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 1 529 - -
Cca03g02631 615 Coils Coil 505 525 - -
Cca03g02631 615 ProSiteProfiles Zinc finger TRAF-type profile. 216 272 IPR001293 GO:0008270
Cca03g02631 615 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
Cca03g02631 615 MobiDBLite consensus disorder prediction 367 402 - -
Cca03g02631 615 MobiDBLite consensus disorder prediction 570 584 - -
Cca03g02631 615 MobiDBLite consensus disorder prediction 349 615 - -
Cca03g02631 615 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 1 529 IPR043211 -
Cca03g02631 615 MobiDBLite consensus disorder prediction 403 466 - -
Cca03g02631 615 MobiDBLite consensus disorder prediction 478 530 - -
Cca03g02631 615 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 281 IPR013083 -
Cca03g02631 615 MobiDBLite consensus disorder prediction 350 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02631 Cca-Chr3 47675854 47680123 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02631 - - ccaj:109798141 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02631 03 47675854 47680123 Cca03g02631 03 47675854 47680123 ECH
Cca03g02631 03 47675854 47680123 Cca02g00699 02 16440732 16441071 PCT