Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02627 ATGGTTGCGGATTCTTTACCACCATATGGATGGAATAGAAATACGTATTTCAAGTTAGCTCTTATTAATCAATTGGATGACAATAAGTCAATTGTAAAGGAGACACATCAAAAGTTCAATGGTGGATATCGTAGCTGGGGCTCATTTTTCATGAATCTTAATGACTTCTATGACTCTAAACAAGGGTATCTTGTGAACAATACATGCACCATTGAAGCTCATGTTTGTGTCTCCGATCTTAGCACTCTCCAAGCTAACAATTACTTGAACAAAATTATTCCATCCAACGAAACTCAATTAGGTGATCAAGTAGCAAGAAATTCAAAATCCACACAACAGGAAGATGATAAACAGACAGAAACATCATATGAGAGTGATACACTTAGTTCTTCAGCAACCTGTGAGTCTAGTCAAACAGAAGAAGAAGTTCAAGGCTCAGATTTGACACTAAAAGACCTTCTAGATTTGGAGAGTTTAGGAAAAGAAGAAGCATCATTTGTTCCATTGTTGGAGGAGGCATGCATATGGCATCCTTCCCTAATAAGGAGCCAAAGGAAAAGTTCTAGATGGTTCAAACTATGGGCATTTTCATCTTTGGGTCAAGTTCTCCATTTACTCAAGACAAATAAGGTGAAAGATATGGATGAAAATGCGTGCAATCACCTTCAAGGTTTATGGGAGGAACTTGTGAAACACTCTGGATTTCAGTTGTCTTGGTTGGAGCCTTATGTTCAATCTGCTTTGGGTATAAAAGCTCATTTGGAAAAAATAACTGAGATGAATAAACTGAAAAACAGTGTGGTTGATTTGGAAATTAAAATGAAGAAGCTGAGGGAAGAGTTGGCAGCTGCAGAAGTTGAGTTTGAGGCAATAAGGAAAGCTTTGGCCGAAGCAAAAAAAGGTTTCATAGAGATAGATTTGAATGCAGATTTAGGTTATGCCATGTTTTAA 951 0.3722 MVADSLPPYGWNRNTYFKLALINQLDDNKSIVKETHQKFNGGYRSWGSFFMNLNDFYDSKQGYLVNNTCTIEAHVCVSDLSTLQANNYLNKIIPSNETQLGDQVARNSKSTQQEDDKQTETSYESDTLSSSATCESSQTEEEVQGSDLTLKDLLDLESLGKEEASFVPLLEEACIWHPSLIRSQRKSSRWFKLWAFSSLGQVLHLLKTNKVKDMDENACNHLQGLWEELVKHSGFQLSWLEPYVQSALGIKAHLEKITEMNKLKNSVVDLEIKMKKLREELAAAEVEFEAIRKALAEAKKGFIEIDLNADLGYAMF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02627 316 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1 123 IPR008974 GO:0005515
Cca03g02627 316 Coils Coil 260 301 - -
Cca03g02627 316 SUPERFAMILY TRAF domain-like 8 78 - -
Cca03g02627 316 Pfam MATH domain 9 76 IPR002083 GO:0005515
Cca03g02627 316 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 5 297 - -
Cca03g02627 316 CDD MATH 8 75 IPR002083 GO:0005515
Cca03g02627 316 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 5 297 - -
Cca03g02627 316 MobiDBLite consensus disorder prediction 100 146 - -
Cca03g02627 316 ProSiteProfiles MATH/TRAF domain profile. 1 75 IPR002083 GO:0005515
Cca03g02627 316 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02627 Cca-Chr3 47641155 47642407 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02627 - - gmx:102664376 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00689 02 16241228 16242873 Cca03g02627 03 47641155 47642407 PCT