Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02625 ATGATGTCGAAGCCCATGAATGTTCTGACAACAAAGCCCTCACCTTTGAGCACCATGGTGGTGCTGCTGATAATTTGCATTCTGAGTTTCTACGCTCTGCATTTCCCTCACTCTTCTTCACCCTCCTCTGCTTCCCGAAACATGGAAACCGTTTTTCTTTCTACCTCTTCAAACTCCACCATCTCCACCTACCTCCGCGCCCTCACGCTGCACCCTCACCTCGCCGGAACAAAACCCGCGTCGGACACCACCTCCTACGTGCTCAACCACTTCCTTTCACTGGGCCTCGAGGCCCATACCGCGTCCTACGCCACGCTCCTCTCGTTCCCCGTGCGCTCCTCCCTCTCGGCACGCTTCGGAGACGGCTCCGCGGCGAGTCTCCCTCTGAGCGAggcggcgtcggcggcgccagtggtggcggcgTACCACGCGTACTCGCCGTCAGGGTCGGTGCATGCGCGCGCGGTGTTCGCGAACTACGGGAGGGAGAGGGACTACCAGGCGCtggcggcgatgggggtgagcgtgagggggtgcgtggtggtggtgaggaagggcggcggggtggggcggggcgcggcggtggaggtggcggagaagcacggggcggcggcggtgctggtgTACGGCGAGAGCGACACGTGGCGGGAGGGGTTTGAGAGGGGGCACGTGATGAGGGGGATAGGGGACCCACTGACTCCGGGGTGGGGTGGGGTTGAGGGTGGTGAGAGACTCGGGTTGGAAGATAGTGAGGTTTTGAAAAGGTTTCCCAAAATACCCTCTATGCCCCTCTCAGCTGAGGTTGCTGACACCATTTTGTCCTCTCTTGGGGGTGTTTCTGTGCCCCTTGAGTGGAGGAGCACCCTTAAGTCTAAGGTCAGGCATGTTGGTCCTGGCCCCACCATGCTCAATTTCACTTACCAGGGTGAAATGAAGGTGGCTACCATTCAAAATGTTTTTGCTGTCATAAAGGGATCGGAAGAGCCCGATCGACATGTTCTGCTTGGGAACCATAGAGATGCATGGACGTATGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCCCTACTTGACATTGCTCGTCGGTTTTCTGTTCTATTGGGCTTGGGGTGGAAGCCAAGGAGGACAATCATTCTCTGCAGTTGGGATGCAGAGGAATTTGGGATGATAGGATCCACTGAGTGGGTTGAACAAAACCTTATTAATCTGGGTTCCAAAGCTGTAGCATACCTTAATGTTGACTGTGCTGTTCAAGGCCCTGGCTTCTTCGTTGGCTCAACTCCTCAGCTAGACAATCTTATTCTTGAGGTCATGAAAAAGGTCAAGGATCCTGACTCTGAGGGTGTGTCATTATATGAGAATTGGGCTGCTGGTGGTGGAGGCAATAATATTCAAAGGCTCAGTGGAGTTGATTCTGATTTTGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAGATTTTCCCGTCTATCACACTGCTTTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGTTACTGGAGTTTGGGGACTTCTAGCCCTTCATTTGGCTGACGATTGCATTCTTCCTTTCAATTACCTTTCATATGCAAATGAGTTACAGCTGTACAAAAACATGTTGAGCAACTTGGTAGATCAGCAAATTTCTCTGCATCCGTTAACTACTTCAATTCAAGAATTTGCTTCTGCTGCCAAAGAAGCTGATGATGAATTAAAGAAACTGAGACTGCAAGAAACTGAAGGTTGTTCTGTCGATATGAAAAAGCGAGCATTGAATGATAGACTAATGCTTGCTGAAAAAGGCTTCTTGGATGCAGATGGACTTCAAGGAAGACAGTGGTTCAAGCATCTCGTGTTTGGGCCTTCCAACGACCATGAAAGGCTGAATTTCTTCCCAGGGGTTTCTGATTCTATTACTACGTCAAATGGTTTTAGTGAAAGAGAAAGGGTAGCAAGAATTCAACATGAGATCTGGAGGGTTGCCAGAGCCATTCGTAGAGCTGCTTCTGCACTCACTGGAGAATTCACCTAA 2079 0.4627 MMSKPMNVLTTKPSPLSTMVVLLIICILSFYALHFPHSSSPSSASRNMETVFLSTSSNSTISTYLRALTLHPHLAGTKPASDTTSYVLNHFLSLGLEAHTASYATLLSFPVRSSLSARFGDGSAASLPLSEAASAAPVVAAYHAYSPSGSVHARAVFANYGRERDYQALAAMGVSVRGCVVVVRKGGGVGRGAAVEVAEKHGAAAVLVYGESDTWREGFERGHVMRGIGDPLTPGWGGVEGGERLGLEDSEVLKRFPKIPSMPLSAEVADTILSSLGGVSVPLEWRSTLKSKVRHVGPGPTMLNFTYQGEMKVATIQNVFAVIKGSEEPDRHVLLGNHRDAWTYGAVDPSSGTAALLDIARRFSVLLGLGWKPRRTIILCSWDAEEFGMIGSTEWVEQNLINLGSKAVAYLNVDCAVQGPGFFVGSTPQLDNLILEVMKKVKDPDSEGVSLYENWAAGGGGNNIQRLSGVDSDFAPFVQHAGVPSIDMYYGRDFPVYHTAFDSYNWMAEYGDPFFHRHVAVTGVWGLLALHLADDCILPFNYLSYANELQLYKNMLSNLVDQQISLHPLTTSIQEFASAAKEADDELKKLRLQETEGCSVDMKKRALNDRLMLAEKGFLDADGLQGRQWFKHLVFGPSNDHERLNFFPGVSDSITTSNGFSERERVARIQHEIWRVARAIRRAASALTGEFT 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02625 692 PANTHER F10A2.10 PROTEIN-RELATED 19 692 - -
Cca03g02625 692 SUPERFAMILY Zn-dependent exopeptidases 57 535 - -
Cca03g02625 692 Coils Coil 573 593 - -
Cca03g02625 692 Pfam Peptidase family M28 318 505 IPR007484 -
Cca03g02625 692 Gene3D - 542 692 IPR036757 -
Cca03g02625 692 SUPERFAMILY Transferrin receptor-like dimerisation domain 539 689 IPR036757 -
Cca03g02625 692 CDD M28_PSMA_like 314 540 - -
Cca03g02625 692 Gene3D - 113 309 - -
Cca03g02625 692 SUPERFAMILY PA domain 106 320 IPR046450 -
Cca03g02625 692 Pfam Transferrin receptor-like dimerisation domain 564 687 IPR007365 -
Cca03g02625 692 Pfam PA domain 136 212 IPR003137 -
Cca03g02625 692 Gene3D Zn peptidases 59 539 - -
Cca03g02625 692 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 19 692 IPR039373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02625 Cca-Chr3 47631205 47636888 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02625 K01301 - gmx:100818733 1147.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02625 03 47631205 47636888 Cca03g02625 03 47631205 47636888 ECH
Cca03g02625 03 47631205 47636888 Cca02g00687 02 16128131 16135269 PCT