Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00687 ATGGTTCAGTTTCTGTTAAAGCGCACGTTCCCGGGGAAGCCGAATCCGTTGTTGGCATTCGTGACGGTTCTGGTTCTCGCCGTCGTGGGATTCTATTCCCTGCATTTCCCTTACCATGCGACCTCCTCGCCGGAACACGCGTTCATTTCCTCCGCCTCCAACGCCACCATCGCGGGCTACCTGCGCGCGCTCACCATGCGCCCGCACCTCGCGGGAACAAAGCCCGCGTCGGCCACCGCGCGCCACGTGTTCGACCACTTCGCCGGCCTGGGCCTCCGCGCCGAGGCCGTCACGCACGCCGCGCTGCTCTCCTACCCCGTGCGCGCCTCGCTCGCGGCGCATTTTAGCGGCGGCGCGGGTGACACGTGGCGCGAGGGGTTTGAGAGGGGTCACGTGATGAGGGGTGGCATTGGGGACCCGCTGAGTCCTGGGTGGGGTGCGGTTGAAGGGGGTGAGAGGTTGGGTTTGGATGATAGTGAGGTTTTGAAAAGGTTTCCCAAAATTCCCTCCATGCCCTTGTCTTCTGAGGCTGCTGAGTCCCTCTTGCTCTCGCTTGGAGGTGCTCCCTTGCCCTTCCATTGGCGGCCTACCCTTAAGTCCTCCTTGGTTTCCCATGTTGGCCCTGGCCCCACCTTCCTCAACTTTACTTATCAGGGTGAATTGAAGATGGCTACCGTTGAAAACATTTTTGCCATTATCAAGGGACGTGAAGAATCTGATCGTTATGTTCTTCTTGGGAATCATAGAGATGCATGGACATATGGTGCTGTTGACCCCAACAGTGGGACAGCTGCCCTACTTGACATTGCTCGTAGATATTCTATTCTATTGCGTTTGGGGTGGAATCCACGGAGGACCATCATTCTATGCAGTTGGGATGCAGAGGAATTTGGAATGATTGGATCCACTGAGTGGGTTGAACAAAACCTTGTTAATCTTGGTTCCAAAGCTGTAGCATACCTTAATGTGGATTGTGCTGTTCAAGGCCAAGGTTTCTTTGCAGGCTCAACTCCTCAGCTAGACGATCTCCTCCTCGAGGTCATTAAAAAGGTCAAGGATCCTGACTCTGAGGGTACAACAATATATGATAATTGGGTGGCTGCTGGTGGAAACTCTAATATTCAAAGGCTCGGTAGAGTTGATTCCGATTTTGCTCCATTTGTGCAACATGCAGGGATTCCATCAATTGATTTATATTTTGGAAAAGATTATCCTGTCTATCATACTGCTTTCGACTCTTACAGCTGGATGACAGAGTTTGGTGATCCTTTCTTTCAGCGCCATGTAGCTGTTACTGGAATTTGGGGGCTTCTAGCCCTTCGCCTTGCTGATGATTCCATTTTACCTTTCAATTATCTTTCCTATGCGGATCAGTTACAAGTGTACCATAACATACTGAGCAACCTTTTAGACAATCGAATTTCTCTAGATCCACTAACTTCGTCTATTCAAGAATTTGCTTCTGCTGCCAAAGAAGCTAATGATGAATCAAAGAAACTGAGATTGCAAGAAACTCCAGATAGTTCTTTAGATATGAAAATGCGAGCATTTAATGATAAACTAATGCTTGCGGAAAAAGGCTTCTTGGATGTTGATGGGCTTCGAGGAAGGCAATGGTTCAAGCATCTTGTTTTTGGACCTTCTAGTGACCATGAAAGCAAGTTGGATTTCTTCCCTGGAATTGCTGATTCTATGTCTGCAATGGCTAAAATGAGTGAAAAAGAAAGGTTGGCGGCAATTCAGCATGAGATCTGGAGGGTTGCCAGGGCTATTCAAAGAGCAGCTTTAGCACTAAGAGGGGAATTGGCCTAA 1812 0.4945 MVQFLLKRTFPGKPNPLLAFVTVLVLAVVGFYSLHFPYHATSSPEHAFISSASNATIAGYLRALTMRPHLAGTKPASATARHVFDHFAGLGLRAEAVTHAALLSYPVRASLAAHFSGGAGDTWREGFERGHVMRGGIGDPLSPGWGAVEGGERLGLDDSEVLKRFPKIPSMPLSSEAAESLLLSLGGAPLPFHWRPTLKSSLVSHVGPGPTFLNFTYQGELKMATVENIFAIIKGREESDRYVLLGNHRDAWTYGAVDPNSGTAALLDIARRYSILLRLGWNPRRTIILCSWDAEEFGMIGSTEWVEQNLVNLGSKAVAYLNVDCAVQGQGFFAGSTPQLDDLLLEVIKKVKDPDSEGTTIYDNWVAAGGNSNIQRLGRVDSDFAPFVQHAGIPSIDLYFGKDYPVYHTAFDSYSWMTEFGDPFFQRHVAVTGIWGLLALRLADDSILPFNYLSYADQLQVYHNILSNLLDNRISLDPLTSSIQEFASAAKEANDESKKLRLQETPDSSLDMKMRAFNDKLMLAEKGFLDVDGLRGRQWFKHLVFGPSSDHESKLDFFPGIADSMSAMAKMSEKERLAAIQHEIWRVARAIQRAALALRGELA 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00687 603 Pfam Peptidase family M28 228 415 IPR007484 -
Cca02g00687 603 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 126 602 IPR039373 -
Cca02g00687 603 Gene3D Zn peptidases 55 108 - -
Cca02g00687 603 Gene3D Zn peptidases 220 449 - -
Cca02g00687 603 Gene3D - 124 219 - -
Cca02g00687 603 SUPERFAMILY Transferrin receptor-like dimerisation domain 449 600 IPR036757 -
Cca02g00687 603 SUPERFAMILY Zn-dependent exopeptidases 52 447 - -
Cca02g00687 603 PANTHER F10A2.10 PROTEIN-RELATED 37 113 - -
Cca02g00687 603 PANTHER F10A2.10 PROTEIN-RELATED 126 602 - -
Cca02g00687 603 Gene3D - 452 603 IPR036757 -
Cca02g00687 603 CDD M28_PSMA_like 224 450 - -
Cca02g00687 603 Coils Coil 483 503 - -
Cca02g00687 603 Pfam Transferrin receptor-like dimerisation domain 474 598 IPR007365 -
Cca02g00687 603 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 37 113 IPR039373 -
Cca02g00687 603 SUPERFAMILY PA domain 125 230 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00687 Cca-Chr2 16128131 16135269 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00687 K01301 - gmx:100817485 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00687 02 16128131 16135269 Cca02g00687 02 16128131 16135269 ECH
Cca03g02625 03 47631205 47636888 Cca02g00687 02 16128131 16135269 PCT