LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g02605	ATGGACTCTGAAAACGGGGTCGCTGTGGAGGAAGAGAAACGTGTTATTGGGGTAACAACAAAGAAAGAAGTTGAAAACGACACTAATGAAGTATCTAAACCCACAGTGGCTGGTGACAATGTTGCAGTTGAAGCCTCTAAAACTTGGTCTGCCAAAAAAAATTCAAAAGGTGCCAAGGAAACTGGTGGTAGAGCAAGTGTTGCTTCCAAGAACAACAAACCTGTCAAAGATAAACCCATTATGAAGGATCTAAGTTCATTATCTCAGAAACAAAGGCCATCCCTTTCTCAAAGCCTTTCATTCCCTGCCAAATCAGCTGGTGAAGATGCTATGCAGAAAAGCATTGATGGGTATATTGTGAGGACAAAAGTTAAACACGTTCAAGGTAATGGGATTAGGGGTAAGCCCCCGATTCGTCATTTAAACAAGCCCGCAAACTCTGAAGGGAACTCGCTGGCAAAAACCAACGCTGGCACACCTGGTTTGAAACGCTCTGTGTTTGGAAGGTCTACTCCAGTTACTGCAGTCACCAAGAACCATACATCTGAGGCATCGTTATCCGTTGATCAGGTGTCAAAAACTGCAAAAGCAAATAAAGAGGATGATGATTCTCATTCCACAACTTCAAGTGCTACTCCCCGTCACAGAAGCAGTGGAAGTGGATTTTCCTTTAGATTGGAAGAAAGAGCTGAAAAGAGGAAGGAGTTTTTCTCTAAGTTGGAGGAAAAAATTCAGGCTAAGGAGGCAGAGAAAACTAACCAACAAGCAAAATCAAAGGAAAACCAAGAGGCAGAGATCAAGCTATTGAGGAAGAGCATGACATTCAAAGCCACTCCAATGCCAAGTTTCTACAAGGAACCACCTCCAAAAGTTGAGCTGAAGAAGATACCAACAACCCGTGCAAGGTCCCCAAAGCTTGGAAGGCACAAAGAATCTGCTATGAACAACAATTCAGGAGAAGATAACTCTTGCTCCAGTCCACGAGGGAAACAACAGAAGAATGATTCAAATAAGGTAAAGGGTCATAAAGATGTGATTCCAAAGAAACCAATCCGGAAAACCCAAGCCAAGATGAAGTCTCAGGAAAATGTAACTACAGCAAGCAAAGAAGAGTGCCAAGATCCACATGTTAACAATTCTGAATGCAAAAATGACATGGAGTTACAATCTGAAACAGGTCATCCACCAAATAGTGCGCTGCTTCTAAATTCAACTACACCCGAGCTTGTGTCATATGAGGTTACTGCTGGAGTGTAG	1257	0.4264	MDSENGVAVEEEKRVIGVTTKKEVENDTNEVSKPTVAGDNVAVEASKTWSAKKNSKGAKETGGRASVASKNNKPVKDKPIMKDLSSLSQKQRPSLSQSLSFPAKSAGEDAMQKSIDGYIVRTKVKHVQGNGIRGKPPIRHLNKPANSEGNSLAKTNAGTPGLKRSVFGRSTPVTAVTKNHTSEASLSVDQVSKTAKANKEDDDSHSTTSSATPRHRSSGSGFSFRLEERAEKRKEFFSKLEEKIQAKEAEKTNQQAKSKENQEAEIKLLRKSMTFKATPMPSFYKEPPPKVELKKIPTTRARSPKLGRHKESAMNNNSGEDNSCSSPRGKQQKNDSNKVKGHKDVIPKKPIRKTQAKMKSQENVTTASKEECQDPHVNNSECKNDMELQSETGHPPNSALLLNSTTPELVSYEVTAGV	418

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	247	407	-	-
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	127	226	-	-
	Cca03g02605	418	Coils	Coil	237	259	-	-
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	357	373	-	-
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	19	108	-	-
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	144	158	-	-
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	170	193	-	-
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	333	351	-	-
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	84	103	-	-
	Cca03g02605	418	Pfam	Targeting protein for Xklp2 (TPX2) domain	222	291	IPR027329	-
	Cca03g02605	418	PANTHER	PROTEIN WVD2-LIKE 4	366	418	IPR044833	GO:0008017
	Cca03g02605	418	PANTHER	PROTEIN WVD2-LIKE 4	1	364	IPR044833	GO:0008017
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	194	209	-	-
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	310	332	-	-
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	247	270	-	-
	Cca03g02605	418	PANTHER	TPX2 (TARGETING PROTEIN FOR XKLP2) FAMILY PROTEIN	366	418	-	-
	Cca03g02605	418	PANTHER	TPX2 (TARGETING PROTEIN FOR XKLP2) FAMILY PROTEIN	1	364	-	-
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	382	407	-	-
	Cca03g02605	418	MobiDBLite	consensus disorder prediction	288	309	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g02605	Cca-Chr3	47457462	47462050	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g02605	-		-	gmx:100794426	660.988

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g02605	03	47457462	47462050	Cca02g00671	02	15633316	15637781	PCT