Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00671 ATGGAATCTGATAATGGAGTTGTTATGGAGGATGAGAAACATGTCATTGGGGAAACAACTAAAGAGAACATAAACAAAGAAGCTGAAAACGGTTGCAATGCTGAAATTCAGACCAAGAGTGAAGTATCTGAACCTATTGTAAAAGTTGAAGGGCCTAAATCTGCAGCAAGTAAAAACTCAAAACTTGCCAAGCAACCTGGTGGCAAAGGTGGTGTTGCTTCAAAGAACAACAAATCTGCCACCAAAGAGAAACCCAATTTGAAGTCCACAACATCATCTCAAACACACAGGCCAAACCTTTCCAAGAGCCTTTCTTTCCCTGCCAAATCAGCTGGTGGAGAAGGCATGAAGAAAAGCATTAATGGCACTCTTGTGAAGACAGAAACTAAAAATGTTAATGGGGCTAGAGCCGAGGCTTCGATTCGTCGTTCAAGCAGGCTGACAAACTCTGAAGTTAACTCAAAGGAGACAAAAACAAACACCGGAAATTCTAACCAAAGGACTTCTTTGACATCCATGACTAGCCTTAAAAGCTCTGAGTCTGGAATGTCTACTCCGGCAAATGCGGTTACCAAGAGCCTTACATCTGAGGCATCTTTACCTGCAGATCAGAATTCCACCCCAGCAAAATCTGAAAAGCCAAATAAAGAGGATGATGATGCTATTTCTACAACTTCAAGTCATACTCCTCGTAGGAGGAGCAGTGGTTCTGGATTTTCCTTCAGATTGGAAGAACGAGCAGAAAAGAGGAAGGAGTTCTTCTCAAAGTTAGAAGAGAAAATTCAGGAAAAGGAAGCAGAGAAAACTAACCAGCAAGAGAAATCAAAGGAAAACCAGGAGGCAGAAATCAAGCAATTGAGGAAGACTATGACATTCAAAGCCACTCCAATGCCAAGTTTCTATAAGGAACCTCCTCCAAAAATTGAATTGAAAAAGATACCAACAACGCGCCCGAAATCTCCAAAGCTTGGAAGACACAAAGGATCTGCTGTGAATAACTCAGAAGAAAAATCTTGTTCTAGCCCACATGGAAAGCAACAACAGAATGATACAATCAAGGCAAAGATAAAGGGAAACAAAGAAGTGATTTCAAAGAAACCAATCAGAAAAACTCAACCCAAGCCGCAGTCTCAGGAAACTGCAATCAGAAAAACTGAAAAGGATTCTGTGAGTACTGCTAAAATCAGCCAAGATGCAAAAGCAGATACAGGAAACAATGAAGAGTGCCATGATCCACCGGTTAACAATTCTGAATACCAAAATGAGATGAAGTTAGAGTCCAAAGATGATCTTGCTCAAAATGGTGCACTGGTCTTGAATTCATCCACACCAGAGATCATATCATATGAGGTTACTGTTGGAGTGTAA 1368 0.4086 MESDNGVVMEDEKHVIGETTKENINKEAENGCNAEIQTKSEVSEPIVKVEGPKSAASKNSKLAKQPGGKGGVASKNNKSATKEKPNLKSTTSSQTHRPNLSKSLSFPAKSAGGEGMKKSINGTLVKTETKNVNGARAEASIRRSSRLTNSEVNSKETKTNTGNSNQRTSLTSMTSLKSSESGMSTPANAVTKSLTSEASLPADQNSTPAKSEKPNKEDDDAISTTSSHTPRRRSSGSGFSFRLEERAEKRKEFFSKLEEKIQEKEAEKTNQQEKSKENQEAEIKQLRKTMTFKATPMPSFYKEPPPKIELKKIPTTRPKSPKLGRHKGSAVNNSEEKSCSSPHGKQQQNDTIKAKIKGNKEVISKKPIRKTQPKPQSQETAIRKTEKDSVSTAKISQDAKADTGNNEECHDPPVNNSEYQNEMKLESKDDLAQNGALVLNSSTPEIISYEVTVGV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00671 455 MobiDBLite consensus disorder prediction 262 419 - -
Cca02g00671 455 MobiDBLite consensus disorder prediction 354 368 - -
Cca02g00671 455 MobiDBLite consensus disorder prediction 1 25 - -
Cca02g00671 455 Pfam Targeting protein for Xklp2 (TPX2) domain 239 307 IPR027329 -
Cca02g00671 455 MobiDBLite consensus disorder prediction 333 353 - -
Cca02g00671 455 MobiDBLite consensus disorder prediction 142 209 - -
Cca02g00671 455 MobiDBLite consensus disorder prediction 210 226 - -
Cca02g00671 455 MobiDBLite consensus disorder prediction 72 106 - -
Cca02g00671 455 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) FAMILY PROTEIN 1 455 - -
Cca02g00671 455 MobiDBLite consensus disorder prediction 262 287 - -
Cca02g00671 455 Coils Coil 247 289 - -
Cca02g00671 455 MobiDBLite consensus disorder prediction 1 245 - -
Cca02g00671 455 PANTHER PROTEIN WVD2-LIKE 4 1 455 IPR044833 GO:0008017
Cca02g00671 455 MobiDBLite consensus disorder prediction 26 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00671 Cca-Chr2 15633316 15637781 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00671 - - gmx:100798810 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02605 03 47457462 47462050 Cca02g00671 02 15633316 15637781 PCT