Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02576 ATGTCGGTGAAGGAGTGTTCGCACCACAAGGGAAAGAAGCACAAGGTCCTGAAACGGATCTTCTGGGGCATAGTGATCGTGGCGTTCATCGTGCTGCTAACAGTTCTGATAATCTGGGCAATCCTGAAGCCTTCAAAGCCAACCTTCATCCTCCAAGACGTGACCGTATACGCGTTCAACGCCACCGTCCCCAACTTCCTGACCTCAAGCTTTCAGGTGACACTCTCCTCGCGCAACCCCAACGACAAAATCGGAATCTACTACGACCGTCTGAACACCTACGTGACCTACCGGAACCAGCAGGTCACCTACCGCACCACCATCCCTCCCTCCTACCAGGGTCACAAGGAAGAGGACGTGTGGTCCCCCTTCGTCTACGGCACCAACGTCCCCGTCGCACCCTACAACTTCCTCGGCCTCAGCCAGGACCAGACCAACGGCAACGTCCTCGTCGTCGTTAAGATTGACGGCAAGGTACGATGGAAGGTGGGTGCCTTCGTTTCCGGCCACTACAACCTCTACGTAAGGTGCCCTGCTTTCATAACCTTTGGCCCAAGGAGCACTGGAATTGCCCTCGGAAATAACGCCGTTAAGTATCAGCTGGTTCAGCGCTGCTCCGTCGGGGTTTGA 630 0.5556 MSVKECSHHKGKKHKVLKRIFWGIVIVAFIVLLTVLIIWAILKPSKPTFILQDVTVYAFNATVPNFLTSSFQVTLSSRNPNDKIGIYYDRLNTYVTYRNQQVTYRTTIPPSYQGHKEEDVWSPFVYGTNVPVAPYNFLGLSQDQTNGNVLVVVKIDGKVRWKVGAFVSGHYNLYVRCPAFITFGPRSTGIALGNNAVKYQLVQRCSVGV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02576 209 Pfam Late embryogenesis abundant protein 74 176 IPR004864 -
Cca03g02576 209 PANTHER OS05G0367900 PROTEIN 4 209 IPR044839 GO:0098542
Cca03g02576 209 PANTHER LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN 4 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02576 Cca-Chr3 47077209 47078481 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02576 - - gmx:100795832 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02576 03 47077209 47078481 Cca03g02576 03 47077209 47078481 ECH
Cca03g02576 03 47077209 47078481 Cca02g00627 02 14050697 14052863 PCT