Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00627 ATGTCGGTGAAGGAGTGCGAGCACCACAAGGGAAAAAAGAGGAAGATCTTCCAGCGAATATTCTGGGGCATAGTGGTGTTCCTCTTCATCGTGCTGGTGACAATCCTCATCATATGGGCCATCCTTAAGCCAACGAAGCCCACCTTCATCCTCCAAGACGTCACCGTTTACGCCTTCAACGCCACCGTTGCCAACTTCTTAACATCCAACTTCCAAGTCACGCTTTCCTCGCGCAACCCCAACGACCACATCGGAGTCTACTACGACCGCCTCGACACCTACGTCACTTACCGGAGCCAGCAGGTCACCTACCGCACCGCCATCCCCCCCTCCTACCAAGGCCACAAGGAGGTCGACGTTTGGTCGCCGTTTGTCTACGGCACCAACGTCCCCGTCGCCCCCTTCAACTTCTTGAGCCTCAGCCAGGACCAGACTAACGGTAACGTCCTCGTCACCATCAAAATTGACGGCAGGGTCCGCTGGAAGGTCGGCGCCTTCATCTCCGGCCGCTACCACCTCTACGTCCGCTGCCCCGCCTTCATCAACTTCGGCCCCGCCAACAACGGCATCTCCGTCGGCAAAGACGCCGTCAAGTATCAGTTAGTCCAACGCTGCTCCGTTAGCGTCTAG 630 0.573 MSVKECEHHKGKKRKIFQRIFWGIVVFLFIVLVTILIIWAILKPTKPTFILQDVTVYAFNATVANFLTSNFQVTLSSRNPNDHIGVYYDRLDTYVTYRSQQVTYRTAIPPSYQGHKEVDVWSPFVYGTNVPVAPFNFLSLSQDQTNGNVLVTIKIDGRVRWKVGAFISGRYHLYVRCPAFINFGPANNGISVGKDAVKYQLVQRCSVSV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00627 209 Pfam Late embryogenesis abundant protein 74 177 IPR004864 -
Cca02g00627 209 PANTHER OS05G0367900 PROTEIN 4 209 IPR044839 GO:0098542
Cca02g00627 209 PANTHER LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN 4 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00627 Cca-Chr2 14050697 14052863 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00627 - - gmx:100788592 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00627 02 14050697 14052863 Cca02g00627 02 14050697 14052863 ECH
Cca03g02576 03 47077209 47078481 Cca02g00627 02 14050697 14052863 PCT