Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02572 ATGCCAATGGctcctccttctccttacattaacattatcattctcttcttaatctcccttctctttcACACCGCATTCCCCAACACCATCACTCTCCCCCTCACTCCTCTCCTCACCAAACCCCAATTCTCAGATCTCAAACACATCGCCTCCGGCTCACTCACCCGGGCCCACCACCTGAagcaccagaggaacagcaacagcagcagcaccaccaCCCAAGTGTACGCCAAAAGCTACGGAGGGTACTCCATAGATCTGAGCTTCGGAACACCAGCCCAAAAAACCCCCTTCATCTTGGACACAGGAAGCAGCCTGACATGGTTCCCCTGCACCCTCCACTACATCTGCTCCCACTGCGCCTCCATCAAAATAAAAACTTTCCTGCCCAAGCTCTCCTCTACCGCCAAACTCCTCGGCTGCACAAACCCCAAATGCTCCTACCTCTACCCCTCACTCTCCCACTGCAACCAAACATGCCCCCCTTACATCCTCCAGTACGGCTCAGGCTCCACCGCCGGCATCTTACTCCTCGACAACCTCGATTTCCCCAAAACAACCGTCCACGATTTCCTCGTCGGCTGCTCCATCCTCTCCATCCGCCAGCCCTCCGGCATCGCCGGCTTCGGCCGCGGCAACGAGTCCCTCCCCTCGCAAATGGCCCTCAAGAGATTCTCCTACTGCTTAATCTCCCACAACTTGGACGACTCAGCGCAAAGCTCCGACCTCCTTCTACAAACCACCTCCTCCGGCGACACCAAAACACAGAACCTCACCTACACGCCTTTTAGCCACAACCCCTCCTCCAACAACTCCGCCTACAAAGAGTACTACTACGTTCCCCTCCGCAAGGTCCTCGTCGGACCCAACTCCGTTAACATTCCGCTTCACTATCTGGAGCCCGATTCCGAGGGTAACGGCGGCACCATTGTCGACAGCGGTACCACCTACACTTACATGGAAAGACCCATTTACGATTCGGTGTCTCGGGAGGTTGTGAACCAGTTGGGGAACTATTCAAGGGCTAAGGGCATCGAGGCCCAATCTGGGTTGAGTCCCTGTTATCATGTTTCCGGCGTCAAGAACCTCACTTTCCCCAGCTTCACTCTTCAGTTCAAAGGCGGCGCCAAAATGAAGTTGCCGCTTGCAAATTATTTCTCGCTGATTCAGAACTCCAACGTTGTGTGTTTCACCGTTGTCTCCGACGATGGCTCCGGTCCGGCGAATATGACGGGTCCGGCCGTCATCTTGGGGAACTATCAGCAGCAGAATTTCTTCATTGAATTTGATTTGGAGAATGAGAGGTTCGGCTTTCGGCATCAGAGTTGCAACAAGAAACATTAG 1344 0.5074 MPMAPPSPYINIIILFLISLLFHTAFPNTITLPLTPLLTKPQFSDLKHIASGSLTRAHHLKHQRNSNSSSTTTQVYAKSYGGYSIDLSFGTPAQKTPFILDTGSSLTWFPCTLHYICSHCASIKIKTFLPKLSSTAKLLGCTNPKCSYLYPSLSHCNQTCPPYILQYGSGSTAGILLLDNLDFPKTTVHDFLVGCSILSIRQPSGIAGFGRGNESLPSQMALKRFSYCLISHNLDDSAQSSDLLLQTTSSGDTKTQNLTYTPFSHNPSSNNSAYKEYYYVPLRKVLVGPNSVNIPLHYLEPDSEGNGGTIVDSGTTYTYMERPIYDSVSREVVNQLGNYSRAKGIEAQSGLSPCYHVSGVKNLTFPSFTLQFKGGAKMKLPLANYFSLIQNSNVVCFTVVSDDGSGPANMTGPAVILGNYQQQNFFIEFDLENERFGFRHQSCNKKH 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02572 447 PANTHER OS07G0603500 PROTEIN-RELATED 9 443 - -
Cca03g02572 447 CDD pepsin_A_like_plant 82 443 IPR034161 -
Cca03g02572 447 Gene3D Acid Proteases 57 242 IPR021109 -
Cca03g02572 447 Pfam Xylanase inhibitor C-terminal 278 439 IPR032799 -
Cca03g02572 447 PANTHER BNACNNG47670D PROTEIN 9 443 - -
Cca03g02572 447 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Cca03g02572 447 PRINTS Pepsin (A1) aspartic protease family signature 309 320 IPR001461 GO:0004190|GO:0006508
Cca03g02572 447 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Cca03g02572 447 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 98 109 IPR001969 GO:0004190|GO:0006508
Cca03g02572 447 Gene3D Acid Proteases 245 447 IPR021109 -
Cca03g02572 447 Pfam Xylanase inhibitor N-terminal 83 243 IPR032861 -
Cca03g02572 447 ProSiteProfiles Peptidase family A1 domain profile. 83 439 IPR033121 -
Cca03g02572 447 SUPERFAMILY Acid proteases 77 443 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02572 Cca-Chr3 47029255 47031167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02572 81 445 Miscellaneous Gene Families AT1G44130 24.495 9.26e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02572 - - gmx:100805927 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02572 03 47029255 47031167 Cca03g02572 03 47029255 47031167 ECH
Cca03g02572 03 47029255 47031167 Cca02g00621 02 13849054 13850712 PCT