Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00621 ATGACACCTCTTCACATTTTCCTCCTCCTCTCCCTCCTCTCCATCACCACCTCCACACCCCACACCATCACCCTCCCCCTCTCCCCCTTATCCACCAACCACCCCTCCCACACCCTCAAACTCGCCGCCACCACCTCCCTCACCAGAGCCCGCCACCTCAAAAAAACCCACCACCACTCTCTCCTCAAAACCCCACTCCACCCCAAAAGCTACGGTGGCTACTCCATCAACCTCAACTTCGGAACCCCACCGCAAACCTTCCCCTTCCTCCTCGACACCGGAAGCACCCTCCTCTGGCTCCCATGCTCCTCCCACTACCTCTGCTCCAAATGCAGCTCCTTCCGAAACACCCCCAAACCCTTCATCCCCAAAAACTCTTCCTCCTCAAAGCTCCTAGGCTGCTCCAACCCCAGATGCGCTTGGCTCTTCGGCCCCAATGTTAAATCCCACTGCTGCAAACATAACGCCGTTAACTGCTCCCAAACGTGTCCACCCTACACTATTCAGTACGGCCTCGGCTCCACCGCCGGGTTCTTACTCTCGGAAAATCTCAACTTTCCCGAGAAAATCGTGAACGATTTTCTCCTCGGCTGCTCCGTCGTCTCCGTCTACCAACCCACCGGAATCGCCGGCTTCGGCCGCGGCCCGGAGTCTCTACCCTCGCAGATGAACCTCACAAGATTCTCCTACTGTTTACTCTCTCACAAGTTCGACGACTCGCCGTCAACGTCTAGCAACCTCGTCTTGGAAACAACCTCCCAAGGAAGAACAAAAACTAACGGCGTCACCTACACGCCGTTTACGAAAAACATAAACACGAACCGAAACCCCGCGTTCGGCGCGTACTACTACGTCACCCTGAGAAGAATCGTGGTTGGGGGGAAGCGCGTGAGGGTTCCGAAGAGGCTGTTGGAGGTTGACGCCAACGGCGATGGTGGGCTCATCGTGGACTCGGGCTCCACGTTCACGTTCATGGAGAGGCCCATTTATGATTTGGTGGCCCAGGAGTTCCGGAGGCAGGTGAACTACACGCGCGCGCGGGAGGTTGAGGCGCGCTCCGGGTTGGGTCCGTGCTTTGTTGCGCCTGGCGGCGGCACGACGTCGTTTCCCGAGATGAGTTTTGAGTTCAGGGGCGGCGCAAAGATGAGGCTGCCCGTGGCGAATTATTTCTCGCTGGTCGGGGAGGAGTCTGACGTGGCGTGTTTGACCGTTGTGTCTGATGACGTGGCGGGTCCCGGCGTGGCGGCTGGACCGGCTCTTATATTGGGGAATTATCAGCAGCAGAATTTTTACGTCGAGTATGACTTGGAGAATGAGAGGTTTGGATTTCGGCGTCAGAGTTGCAAAACGAGCGTTTAA 1359 0.5703 MTPLHIFLLLSLLSITTSTPHTITLPLSPLSTNHPSHTLKLAATTSLTRARHLKKTHHHSLLKTPLHPKSYGGYSINLNFGTPPQTFPFLLDTGSTLLWLPCSSHYLCSKCSSFRNTPKPFIPKNSSSSKLLGCSNPRCAWLFGPNVKSHCCKHNAVNCSQTCPPYTIQYGLGSTAGFLLSENLNFPEKIVNDFLLGCSVVSVYQPTGIAGFGRGPESLPSQMNLTRFSYCLLSHKFDDSPSTSSNLVLETTSQGRTKTNGVTYTPFTKNINTNRNPAFGAYYYVTLRRIVVGGKRVRVPKRLLEVDANGDGGLIVDSGSTFTFMERPIYDLVAQEFRRQVNYTRAREVEARSGLGPCFVAPGGGTTSFPEMSFEFRGGAKMRLPVANYFSLVGEESDVACLTVVSDDVAGPGVAAGPALILGNYQQQNFYVEYDLENERFGFRRQSCKTSV 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00621 452 SUPERFAMILY Acid proteases 67 448 IPR021109 -
Cca02g00621 452 PANTHER BNACNNG47670D PROTEIN 5 448 - -
Cca02g00621 452 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 89 100 IPR001969 GO:0004190|GO:0006508
Cca02g00621 452 Gene3D Acid Proteases 50 249 IPR021109 -
Cca02g00621 452 CDD pepsin_A_like_plant 73 448 IPR034161 -
Cca02g00621 452 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Cca02g00621 452 PRINTS Pepsin (A1) aspartic protease family signature 314 325 IPR001461 GO:0004190|GO:0006508
Cca02g00621 452 PRINTS Pepsin (A1) aspartic protease family signature 420 435 IPR001461 GO:0004190|GO:0006508
Cca02g00621 452 PANTHER OS07G0603500 PROTEIN-RELATED 5 448 - -
Cca02g00621 452 ProSiteProfiles Peptidase family A1 domain profile. 74 444 IPR033121 -
Cca02g00621 452 Pfam Xylanase inhibitor N-terminal 74 247 IPR032861 -
Cca02g00621 452 Pfam Xylanase inhibitor C-terminal 283 444 IPR032799 -
Cca02g00621 452 Gene3D Acid Proteases 250 452 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00621 Cca-Chr2 13849054 13850712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00621 72 448 Miscellaneous Gene Families AT1G44130 25.806 1.02e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00621 - - gmx:100808552 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00621 02 13849054 13850712 Cca02g00621 02 13849054 13850712 ECH
Cca03g02572 03 47029255 47031167 Cca02g00621 02 13849054 13850712 PCT