Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02551 ATGACTATGGTTTGCACCACCGACGAAGCAAGCTGCGGCGCCTCCGCCATCTCCGCCGTGCATCCCGACGTAATCCAAACCCACATCCTGACGCGACTCCACGGCCCGGCGCTGGCGTGCGTGGCCAGCACGTGCTCGGAACTCAACGCGCTCTCGGCGCACGAGCCGCTCTGGGCGGAGATATGCCGCGCCACGTGGCCTTCCACGAGCGCGCCACGCGTGCGCCACGTCATCTCTACGTTCCCACGCGGCTCGCGCTCTTTCGTCTCCGACTCGCTGGCCTCGTTCTCGGCGCGCGGCTGGCGCGAGGCGAGCGCGGACCGCGCGCCGGAGCTGATATCGGCGGTGGATGTTTTCTTCGAGGGGAGGGCGGTGCTGTCGAGGGTGGTGGAGACGGAGACGGAGTCCGGGTGGTTCCGGTGCTCGCCGTTTAGGGTGGACGTGCTGGATCCGAAGGAGGCGGCGGCGACGGCGGTGGAGTATCCGCGGAGCGAGGAGGAGTGCGCGGAGATCGGGGAGAAGCTGAGGCTGAGCTGGATAGTGGTGGATCCTGAGGggcggcgcgcggtggaggtgtccggagggagagcggtgtcggtggagcggcactggctgagcggggaggtgagggtgcggttggcgacggtggtaggcggcggggagagggggtcggcgacggaggcggcgctgtgcagcgtgacggtgacgttcggcggtgAGATGCAGGTGAGGGAAGCGTGTCTTGAGATGGAGGACTTGGATGGGATGCAGCTTAATGGGAAGGAGAGTTTGGGGATTTTGCAGAGGGCGTTGGAGGGTAAAAGGGGAAAGTTGCTTTCTGAGGGTCACCACGGGAATGATAGATTCGCGGATTTCGTCTATAGAAAAATGGAGAGAAAGGAAAGGAAAGTGAGAGATGAACGAAGGTTGGATTTACTCTGCCTCTGTCTGGGTTTCGCTATTTTGTCCTTTGCCGCTCTTTCCACTCTCTTTCTCTGA 999 0.5135 MTMVCTTDEASCGASAISAVHPDVIQTHILTRLHGPALACVASTCSELNALSAHEPLWAEICRATWPSTSAPRVRHVISTFPRGSRSFVSDSLASFSARGWREASADRAPELISAVDVFFEGRAVLSRVVETETESGWFRCSPFRVDVLDPKEAAATAVEYPRSEEECAEIGEKLRLSWIVVDPEGRRAVEVSGGRAVSVERHWLSGEVRVRLATVVGGGERGSATEAALCSVTVTFGGEMQVREACLEMEDLDGMQLNGKESLGILQRALEGKRGKLLSEGHHGNDRFADFVYRKMERKERKVRDERRLDLLCLCLGFAILSFAALSTLFL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02551 332 PANTHER OS12G0156500 PROTEIN 3 323 - -
Cca03g02551 332 PANTHER F-BOX PROTEIN-RELATED 3 323 IPR045283 -
Cca03g02551 332 SUPERFAMILY F-box domain 22 87 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02551 Cca-Chr3 46756185 46758168 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02551 - - vra:106757292 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02551 03 46756185 46758168 Cca03g02551 03 46756185 46758168 ECH
Cca02g01296 02 31108236 31110611 Cca03g02551 03 46756185 46758168 PCT