Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01296 ATGAATTACGCCAGTCTAATTTCCGGCGGAGGATGGCTGCTCCGGCGACTGTGCACTGCGGCCGAGACTCCGGGGAAGAAGCTAAACCTTTATCGAATGTTATCGGCGCTGGAGATGACCGGAGGTAGCGTGTCGGATACTTTGGACCACTACATAATGCACGGCAGAGCCGTCAGAAAACAAGAACTCGAGAGATGCGTCGAGCAGCTCCGAAAGTATCGCAGATTCCAGCACGCACTCGAGATAATAGAATGGATGGAGATGAGGAAAATTAACTTATCCCGGAATAACATCGCAGTTTATTTAGATCTTGTGTCGAGAGCCAAAGGGGTAGTTGCTGCTGAGAATTTTTTCAGCGGTCTTCCCCCTCCAGCCAAGAATAATCTCATGGGTATGTTCTTGAGACTTGGTCAACCCATGAAGGTCCCTCAGCTGGTGCGTGATATGAAGCACAGGAATATTCCCTTGTCAGCATTCACATATCATGTCTGGATGAACAGCTGCGCTGCTTTGAACGATCTTGGCGCGGTGGAGAGTGTCTATGAGGAGATGAAAAGGGAAGATGGAAACCAAATTGGTTGGCAGACTTACAGCAACCTTGCTGCTATTTATACAAAGGCTAAGGACTTTGAGAAGGCTGAGATGATGCTTAAGATGCTGGAGAAAAAAGTGAGGCCGCGACAGCGTGACGCGTACCATTTCTTGCTTGGCCTCTATGCAGGGATTGGTAATCTTGGAGAGGTTCATAGGGTGTGGAACTCCCTCAAGTCTGTCTCCCCTGTGATCAATGTCAGCTATCTTACCATGCTTAGTACCCTCCGAAGGCTTAAAGATGTGGAGGGCATAACAAGATGCTTTAAGGAGTGGGAGTCTAGTTGTGCTAGTTATGACGTGAGGTTAGTTAGTGTTTGTGTTAGTGCTTACTTGAATCAGAACATGGTGGAAGAAGTTGCATTGGTGTTTGAGGGGGCTAGTAGGAGGAGCAAACAGCCTTTACTTAGGATAAGGGAAACGTTCATGATGTTTTTCTTGGAGAAGCGTCAGTTGGATGGTGCTGTGAGGCACTTAGAGGCGGCACTATCAGAAGTCAAGGGTGATGAATGGCGTCCTTCACCAAAGCTTGTTGGGGCGTTTCTCAAGTACTATGAAGAAGAGACTGGTGTTGATGGTGTTGCTGAGTTGAGCAAGATTTTCCAGGCTAACAATTTTGATGATTCCTGGATTAAAAATTGCATTACAGCAACCGAATCATCTCCAGGAATTGATCCAATATTGAAGGAAGATTCTCAAGTCAACCATGCGTAG 1305 0.4682 MNYASLISGGGWLLRRLCTAAETPGKKLNLYRMLSALEMTGGSVSDTLDHYIMHGRAVRKQELERCVEQLRKYRRFQHALEIIEWMEMRKINLSRNNIAVYLDLVSRAKGVVAAENFFSGLPPPAKNNLMGMFLRLGQPMKVPQLVRDMKHRNIPLSAFTYHVWMNSCAALNDLGAVESVYEEMKREDGNQIGWQTYSNLAAIYTKAKDFEKAEMMLKMLEKKVRPRQRDAYHFLLGLYAGIGNLGEVHRVWNSLKSVSPVINVSYLTMLSTLRRLKDVEGITRCFKEWESSCASYDVRLVSVCVSAYLNQNMVEEVALVFEGASRRSKQPLLRIRETFMMFFLEKRQLDGAVRHLEAALSEVKGDEWRPSPKLVGAFLKYYEEETGVDGVAELSKIFQANNFDDSWIKNCITATESSPGIDPILKEDSQVNHA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01296 434 Pfam PPR repeat 159 187 IPR002885 -
Cca02g01296 434 Pfam PPR repeat 196 222 IPR002885 -
Cca02g01296 434 PANTHER OS01G0301500 PROTEIN 4 126 - -
Cca02g01296 434 PANTHER OS01G0301500 PROTEIN 127 429 - -
Cca02g01296 434 TIGRFAM PPR: pentatricopeptide repeat domain 159 188 IPR002885 -
Cca02g01296 434 Gene3D Tetratricopeptide repeat domain 233 402 IPR011990 GO:0005515
Cca02g01296 434 SUPERFAMILY TPR-like 157 260 IPR011990 GO:0005515
Cca02g01296 434 PANTHER OS12G0527900 PROTEIN 4 126 - -
Cca02g01296 434 PANTHER OS12G0527900 PROTEIN 127 429 - -
Cca02g01296 434 Gene3D Tetratricopeptide repeat domain 59 232 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01296 Cca-Chr2 31108236 31110611 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01296 30 405 EF-hand Containing Proteins AT1G02150 30.000 1.03e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01296 - - gmx:100781679 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01296 02 31108236 31110611 Cca02g01296 02 31108236 31110611 ECH
Cca02g01296 02 31108236 31110611 Cca03g02551 03 46756185 46758168 PCT