Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02474 ATGGAGGTTGGAGAATCAGAGAGAAAGATGCCTCAAAAGCAGGTTCCTTGGGTACCCGCCACCCCGTTGAGGCCCATTCTTCCGACGCCAGCGCCGATCTGGACTACTGGGGAGGGAAGCCAACTGGGCTCTTATTCCAATGGTGTAGCGGCATGTTTTGAAGCCTCAGCAGGTGCAGAGATGAACCACTGGTCTCACCGCTGGTCAGAACCTGCGCCTTTAGCCCATGACAATGCCAAAATTCGCGTACCAATATCATTTGCTGGCCTTTCCGGCTCAAGTAACCGCATTGCTGAACTTTTGACTCAACCAGATGCTTCATCAGCATATTCCAGTGCAACACATGATGACTTTTTCAACCAGCTTGTTCCTACATATAATTCAGAGTTCAACCCGGCCTATTCATTACTTCGCCATCACCATCATCATGTCTCTCGGGAGCAACCGTTTCTCAATACTATCCATGACCAGTATCAAGATCTTCAGGGCACACCATACTTTGCTTACTATAACAAGGCATTACCCCAAATTGCCCCAACCCCAGCTAATGACATCACAGCAGAAGCCAGACAAGATGCAGAAACACAAATAACAACTGAAAAAAGGAATCAAGAGGGAGGGGAGAAAAATGTCTCACCCACACCATGCAAGTCTGTTAAAGAAGTTGCTGCCCTATCTACACCATATAAGGAAATAAGCCATGATTTTGATCTGAATAAAACACCTCAGCCAAAACCAAGAAGAAGAAAGCACCGACCCAAGGTCATCAAAGAAATCAAACCCAAAAGGCAGCAAGTTGCTACAAAGCCCCCAAAAGATCCATCAAAAGAAAAACCTACTGAAAAGAAGGCAAGAAGGAAAGGATTGAACACAACTTCTACTCCTCAAACAGAAGTGACACAATGCACAAAATCTGCCAAAAAGACATGTAGAAGGTCCTTGAATTTTGACATAGAAGAACAACCAAGAAATGATAACTCTGCATGCAGAGAAAATGTGATTACACATTTTGGCAGAAACATCAGTGCAGTGGTTGAGGAAACACAAGCCTTAAATAACCTCGTGGCATTACAAGGAGACTCGAGGGATTGGATGATTGCTCAAGATTACAATCAAAATTTGAGCAGAGAGTCACCTCAGTTACATGCAGTTGGTTCCAAGAGAAAACAACCTGTTATTGAACCGCTAGATAATAACAGCATTAATCTGATTGGAGCACAATATAATGCAGTGCAGGCATACAGCCAAAAGTATTGTGTCCAATTTCCAAATGTCCAGAAAAAAAGGAGAAGTGGAAAGGGCAGAATTTCAAACACACCCTACCCATCTTCCGTGACTGCCACAAAAGATGCATCACTAGCAACATGCCTACAAGATGCTAGATCACATTTTTATGCATCATGTCCTACTTTGTGGACTTCTGCTTCTGAATATAATGCAGCTGGTGTCCCAGTCATAAATACAGTTACAGAAAGGGCTATTCATGATAAACCTCAATCACTTGAGTATAACTTATCTTTAGGGCAGAGGAGGCCAACCAAAAGAAGATCGAGAGTCCCTGCTAGAAAGTGTGATGCCAAAGTAGCATGTACCAGAAAACAAACATGCAGTTCTGACAGACCAACATTTGGGGATGCCGAAAGACCACAGACATGCATCGATGCTTTAGTTGCAGAGATGCGGGCATCACTCACAAAAAAGAAACGAACTAGAAAGAGAAGTATTTCTGTCAGCTCAGCATATGCTTGCACAAATGCAATGCAACAGCACCATAAAGTCATGTTGGAGTCACAAATATCATTAGGTGTTGCTCGTGAAGAGATATGGAAAAACATACATACTGTGGATGCATTAACAGAGCAATTTAGACACCTAAACATATACAGAGAAGCTACAGAGCTTGTCCCTTATAACCAGCAAAATCAAAAAAACAAAGGACTTGTCAGTGAAAATGGCACCATGGTTCCCTATAAAGGCCCATTTGATCCCACAAAGAAGCATGCACGACCTAAAGTTGACCTTGATGAGGAGACTAATAGGGTTTGGAGGCTTCTATTGTTGGATATAAACAGTCATGGGATTGATGGAACAGATGAAGACACGGTCAAATGGTGGGAAGAGGAACGAAATATGTTTCACGGACGAGCAGACTCATTTATTGCACGGATGCATCTTGTACAAGGAGACAGACGCTTTTCTAAATGGAAGGGATCAGTTGTGGATTCCGTGGTTGGTGTTTTCCTCACTCAAAATGTCTCGGACCATCTTTCCAGTTCTGCATTCATGTCCCTTGCTGCTCGATTTCCTCTAAGGTCAAGCAGCAAGTACAAAACATGCCAGGAGGAAAGCACAAGTGTGATAGTCAACGAACCACAAGTGTGCATTGTGGAGCCAGAAGAAAATGAAAAACTAGATGAGAAAATATTGGATCAATCTGTTTGTGAATTGAATTCTTTGACAATAGACATCATCGAGCATTCTGAAGAAAGAGAAGCTGTTGACAGCAATGATTCCTGCAGATCTACCAACAGCTTAATTGGTGTAACAGATAAATCAAACAGCAAATTGATGGAATCAGCTGAAAGACATAACAGTGAACATAGTCCAGTGGAGAGTGGAGCAATGAGTGCCATGACTGGGGAAGGGCAAGAAAATTTATGCCATGAAAGTGCTAGGAAAGAGTTAAATTATGTATTTTCATCCCAATGCTCTGCCGTTACATCTCAAATGTCAGGGGATTTTTCAATAGATCAAAATCCTGAAAAGATAGGATCATTCTCAGATAGCAACTCAGAAATAGAAGACCTGTCAAGTGCTGCCAAGTACAACATTTATCATAACAGAACTTCTTTCAGTGAGCTTCTAGAAATGGCAAGTTCAACCTTGTTGCATGAAGTTAACAGTCAAAGAAGTAAATCCACTGAGAACTTAAGAGATACATGCGGTCCATCTATAGACATGAAGCATGACAACCTGGTAGAAAACTTGGAAAAATCAAATGTTACTGAAGGCTCCTTAGAAGCATCCATCAATGAATATACTTTGAAAATAGCCCCAAACTCAGGAGTAGTTGAAGTAAACTGTTATGATCCTCTCAACATAGAAGCCCCATCCAGTGGCTCCTCAAAGAATAAAGATGAGAATGACAAAAGATCCAATTTTCCAACAGAATCTGACAGCCAAGCTGCAATTGTCCATTCTCAAGGGCAAACTCAAGGTCCGATGCAGAAAGCCAGGGAACTGGATTTCGGTGACCACAACTATGCCATAAGGAATGAAAACAGTAAGAAGGATTCTGCCCCTGCAAAATCGAGGAAAAGGGAGCGTGGaaaagtgaaaaaagtgaaaaatgtgaaaaaagtgaaaaaagtgaaaaaagtgaaaaaagtgaaaaaagtgaaaaaagtgaagaaagagaaaaaGGAGAAAAATAATGATTTTGATTGGGATAGTTTAAGAATACAAGCACAAGCCAAGGCAGGGAAAAGAGAAAAGACAGAGAACACTATGGACTCAATGGACTGGGATGCTGTAAGACGGGCAGATGTCAATGAAATTGCTAAAGTAATCAAAGAAAGGGGCATGAACAACATGCTTGCTGAGCGTATTCAGAATTTCCTGAACCTGTTGGTTGACAAGCATGGGGCCATAGATCTTGAGTGGCTGAGAGATGTCCCACCTGACCAAGCAAAAGAATTCTTGCTCAGCATAAAAGGATTGGGATTGAAAAGTGTGGAGTGTGTACGGCTCTTAACACTGCACCATCTTGCTTTCCCGGTGGACACGAATGTTGGACGTATAGCCGTTCGATTGGGATGGGTACCTCTCCAGCCACTGCCAGAATCGCTACAGTTGCATCTTCTAGAATTGTACCCAGTGTTGGAATCCATCCAAAAATATCTCTGGCCTCGACTCTGCAAGCTAGACCAAAGAACATTGTATGAGCTGCATTACCAGCTGATTACATTTGGAAAGGTCTTCTGTACTAAAAGCAAACCAAATTGCAATGCGTGCCCAATGAGAGGGGAATGCAGACACTTTGCAAGTGCTTTTGCAAGTGCAAGGCTTGCCCTACCAGGACCAGAGCAAAAGAGTATAGTTATCGCAACTGGAAACAATGCAACTGAGCAGAACCCATCACTAGTCACCAATCAGCTGCCCTTGCTTCTCCCTGAAAATACAAACCAAAGAGAACTTCAACAGACAGAATTGACCAGGCAACTAGAAGCAAAATCTGAAATCAATATCAGCCAACCTATTATCGAAGAGCCAACAACTCCAGAGCCAGAATGCTCCCAAGTATCAGAAAATGATATAGAGGATACCTTTAATGAGGAGTCGGACGAAATTCCCACCATCAGACTAAACATGGAAGAATTCACTTTGAACGTGCAAAACTATATGGAAAAAAACATGGGCCTTCAAGAAGGCGAAATGTCAAAGGCCTTGGTCGCTCTACATCCAGATGTTGCATGCATTCCTACACCCAAGCTGAAGAATGTGAGCCGATTGCGAACAGAGCATTATGTTTATGAACTCCCTGATTCACATCCTATTCTGAATGGGTGGGACAAGCGAGAACCTGATGATCCAGGCAAATACCTTCTAGCTATATGGACTCCAGGGGAGACAGCGGATTCTATACAGCCACCACAAAGAAAATGCAGTTCTCAGGACTGTGGCCAGCTCTGTAATGAGAAGCAATGTTTTTCATGCAACAGTCTCCGTGAAACAAATTCACAGATAGTTCGTGGGACACTCCTGATACCATGTCGAACAGCTATGAGAGGGAGTTTTCCACTAAATGGCACCTATTTCCAAGTCAACGAGGTTTTCGCAGACAATTACTCAAGTGTTAACCCAATTAGTGTTCCCCGGAGTTGGATATGGAACCTTGAAAGGCGAACAGTGTATTTTGGAACCTCCGTAACATCCATATTTAGAGGTTTATCAACACGAGAAATTCAACAATGCTTTTGGAGAGGATATGTTTGTGTACGAGGATTTGACAGGGAAAAGTGTGCACCCCGTCCTCTGTTAGCTAGACTACACTTCTCGCCTAGTAAGTCGCCAAAGAACAAGGACAAGACCAAAAAAGAGTCCAAATCGAGAAAAACACAAGGATTGAGAAAGAAAAAAAATACAGAACAGCCAGAATTGCTTTCCAACAATCACAACCTTCAGGAGACCGGTGGACCCTGA 5202 0.4202 MEVGESERKMPQKQVPWVPATPLRPILPTPAPIWTTGEGSQLGSYSNGVAACFEASAGAEMNHWSHRWSEPAPLAHDNAKIRVPISFAGLSGSSNRIAELLTQPDASSAYSSATHDDFFNQLVPTYNSEFNPAYSLLRHHHHHVSREQPFLNTIHDQYQDLQGTPYFAYYNKALPQIAPTPANDITAEARQDAETQITTEKRNQEGGEKNVSPTPCKSVKEVAALSTPYKEISHDFDLNKTPQPKPRRRKHRPKVIKEIKPKRQQVATKPPKDPSKEKPTEKKARRKGLNTTSTPQTEVTQCTKSAKKTCRRSLNFDIEEQPRNDNSACRENVITHFGRNISAVVEETQALNNLVALQGDSRDWMIAQDYNQNLSRESPQLHAVGSKRKQPVIEPLDNNSINLIGAQYNAVQAYSQKYCVQFPNVQKKRRSGKGRISNTPYPSSVTATKDASLATCLQDARSHFYASCPTLWTSASEYNAAGVPVINTVTERAIHDKPQSLEYNLSLGQRRPTKRRSRVPARKCDAKVACTRKQTCSSDRPTFGDAERPQTCIDALVAEMRASLTKKKRTRKRSISVSSAYACTNAMQQHHKVMLESQISLGVAREEIWKNIHTVDALTEQFRHLNIYREATELVPYNQQNQKNKGLVSENGTMVPYKGPFDPTKKHARPKVDLDEETNRVWRLLLLDINSHGIDGTDEDTVKWWEEERNMFHGRADSFIARMHLVQGDRRFSKWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLAARFPLRSSSKYKTCQEESTSVIVNEPQVCIVEPEENEKLDEKILDQSVCELNSLTIDIIEHSEEREAVDSNDSCRSTNSLIGVTDKSNSKLMESAERHNSEHSPVESGAMSAMTGEGQENLCHESARKELNYVFSSQCSAVTSQMSGDFSIDQNPEKIGSFSDSNSEIEDLSSAAKYNIYHNRTSFSELLEMASSTLLHEVNSQRSKSTENLRDTCGPSIDMKHDNLVENLEKSNVTEGSLEASINEYTLKIAPNSGVVEVNCYDPLNIEAPSSGSSKNKDENDKRSNFPTESDSQAAIVHSQGQTQGPMQKARELDFGDHNYAIRNENSKKDSAPAKSRKRERGKVKKVKNVKKVKKVKKVKKVKKVKKVKKEKKEKNNDFDWDSLRIQAQAKAGKREKTENTMDSMDWDAVRRADVNEIAKVIKERGMNNMLAERIQNFLNLLVDKHGAIDLEWLRDVPPDQAKEFLLSIKGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKSIVIATGNNATEQNPSLVTNQLPLLLPENTNQRELQQTELTRQLEAKSEINISQPIIEEPTTPEPECSQVSENDIEDTFNEESDEIPTIRLNMEEFTLNVQNYMEKNMGLQEGEMSKALVALHPDVACIPTPKLKNVSRLRTEHYVYELPDSHPILNGWDKREPDDPGKYLLAIWTPGETADSIQPPQRKCSSQDCGQLCNEKQCFSCNSLRETNSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADNYSSVNPISVPRSWIWNLERRTVYFGTSVTSIFRGLSTREIQQCFWRGYVCVRGFDREKCAPRPLLARLHFSPSKSPKNKDKTKKESKSRKTQGLRKKKNTEQPELLSNNHNLQETGGP 1733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02474 1733 SUPERFAMILY DNA-glycosylase 711 1349 IPR011257 GO:0003824|GO:0006281
Cca03g02474 1733 MobiDBLite consensus disorder prediction 1685 1733 - -
Cca03g02474 1733 Gene3D Hypothetical protein; domain 2 1161 1255 - -
Cca03g02474 1733 MobiDBLite consensus disorder prediction 966 985 - -
Cca03g02474 1733 MobiDBLite consensus disorder prediction 966 980 - -
Cca03g02474 1733 MobiDBLite consensus disorder prediction 259 288 - -
Cca03g02474 1733 MobiDBLite consensus disorder prediction 850 875 - -
Cca03g02474 1733 Pfam RRM in Demeter 1585 1685 IPR028925 -
Cca03g02474 1733 MobiDBLite consensus disorder prediction 1719 1733 - -
Cca03g02474 1733 MobiDBLite consensus disorder prediction 233 300 - -
Cca03g02474 1733 CDD ENDO3c 1174 1292 IPR003265 GO:0006284
Cca03g02474 1733 SMART ccc3 1327 1347 IPR003651 GO:0051539
Cca03g02474 1733 Gene3D - 1256 1344 IPR023170 -
Cca03g02474 1733 SMART endo3end 1152 1326 IPR003265 GO:0006284
Cca03g02474 1733 MobiDBLite consensus disorder prediction 1688 1702 - -
Cca03g02474 1733 MobiDBLite consensus disorder prediction 649 670 - -
Cca03g02474 1733 MobiDBLite consensus disorder prediction 1090 1113 - -
Cca03g02474 1733 MobiDBLite consensus disorder prediction 244 258 - -
Cca03g02474 1733 PANTHER ROS1, PUTATIVE-RELATED 382 1063 - -
Cca03g02474 1733 PANTHER ROS1, PUTATIVE-RELATED 1075 1697 - -
Cca03g02474 1733 PANTHER ROS1, PUTATIVE-RELATED 1 332 - -
Cca03g02474 1733 MobiDBLite consensus disorder prediction 188 219 - -
Cca03g02474 1733 MobiDBLite consensus disorder prediction 1035 1060 - -
Cca03g02474 1733 Pfam Permuted single zf-CXXC unit 1551 1582 IPR028924 -
Cca03g02474 1733 MobiDBLite consensus disorder prediction 1090 1105 - -
Cca03g02474 1733 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 1 332 IPR044811 GO:0019104|GO:0035514|GO:0080111
Cca03g02474 1733 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 1075 1697 IPR044811 GO:0019104|GO:0035514|GO:0080111
Cca03g02474 1733 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 382 1063 IPR044811 GO:0019104|GO:0035514|GO:0080111
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02474 Cca-Chr3 45892634 45903600 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02474 - - gmx:100787368 2485.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02474 03 45892634 45903600 Cca03g02474 03 45892634 45903600 ECH
Cca03g02474 03 45892634 45903600 Cca02g00515 02 11012307 11026801 PCT